BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00026631
         (302 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81176.1| non-LTR reverse transcriptase [Arabidopsis cebenn...    64   1e-08
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...    59   4e-07
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...    57   1e-06
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...    55   5e-06

>gb|ABW81176.1| non-LTR reverse transcriptase [Arabidopsis cebennensis]
          Length = 464

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 30/61 (49%), Positives = 40/61 (65%)
 Frame = -2

Query: 253 QNSRDQVIVLGDNNTTYFFKSMQVRRMTNKITCLKDGSGNMIEEVDEIGRECVEYYRELY 74
           Q SR++ I LGD NT YF  S  +RR  N+I  LKD  G  +EE +E+ +  VEYY++LY
Sbjct: 311 QKSREKWIALGDRNTKYFHTSTIIRRRRNQIEMLKDDEGKWVEEPEELAKMAVEYYQKLY 370

Query: 73  S 71
           S
Sbjct: 371 S 371


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 26/67 (38%), Positives = 43/67 (64%)
 Frame = -2

Query: 271 DESMKKQNSRDQVIVLGDNNTTYFFKSMQVRRMTNKITCLKDGSGNMIEEVDEIGRECVE 92
           +E++  Q SR++++ LGD NTT+F  S  +RR  N+I  LKD     + E + + +  ++
Sbjct: 147 EETLWFQKSREKLLALGDRNTTFFHTSTVIRRRRNRIEMLKDSEDRWVTEKEALEKLAMD 206

Query: 91  YYRELYS 71
           YYR+LYS
Sbjct: 207 YYRKLYS 213


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 28/65 (43%), Positives = 42/65 (64%)
 Frame = -2

Query: 271 DESMKKQNSRDQVIVLGDNNTTYFFKSMQVRRMTNKITCLKDGSGNMIEEVDEIGRECVE 92
           DES+ KQ SR Q + LGD+N+ +FF +++VR+  NKI  L++  G+ + E  EI  E   
Sbjct: 343 DESILKQKSRIQWLSLGDSNSKFFFTAIKVRKARNKIVLLQNDRGDQLTENTEIQNEICN 402

Query: 91  YYREL 77
           +YR L
Sbjct: 403 FYRRL 407


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 27/69 (39%), Positives = 41/69 (59%)
 Frame = -2

Query: 280 SLNDESMKKQNSRDQVIVLGDNNTTYFFKSMQVRRMTNKITCLKDGSGNMIEEVDEIGRE 101
           +L +E    Q SR   +  GD+NTT+F + M  RR  N+I  L D +G  IE  DE+   
Sbjct: 343 ALAEERFLCQKSRVLWLKCGDSNTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQTH 402

Query: 100 CVEYYRELY 74
           CV++++EL+
Sbjct: 403 CVDFFKELF 411