BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00026610
         (259 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containi...   145   4e-33
ref|XP_002324029.1| predicted protein [Populus trichocarpa] gi|2...   135   4e-30
dbj|BAE98404.1| hypothetical protein [Arabidopsis thaliana]           134   6e-30
ref|NP_198814.1| pentatricopeptide repeat-containing protein [Ar...   134   6e-30
ref|XP_002870737.1| pentatricopeptide repeat-containing protein ...   133   1e-29

>ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic [Vitis vinifera]
           gi|296087770|emb|CBI35026.3| unnamed protein product
           [Vitis vinifera]
          Length = 675

 Score =  145 bits (365), Expect = 4e-33
 Identities = 70/85 (82%), Positives = 76/85 (89%)
 Frame = -3

Query: 257 LHELKRPDNIPRETAITILAGAGRIEEATWIFRQAFIEGEVKDISVFGCMIDLLSRNKKH 78
           LHELKRPDNIPRETAITILAGAGRIEEATW+FRQAF  GEVKDI+VFGCMIDL SRN+KH
Sbjct: 493 LHELKRPDNIPRETAITILAGAGRIEEATWVFRQAFDAGEVKDITVFGCMIDLFSRNRKH 552

Query: 77  AGVIEVFEKMRAAGYFPDAISISQV 3
             VIEVF+KMR AGYFPD+  I+ V
Sbjct: 553 TNVIEVFDKMRGAGYFPDSNVIALV 577


>ref|XP_002324029.1| predicted protein [Populus trichocarpa] gi|222867031|gb|EEF04162.1|
           predicted protein [Populus trichocarpa]
          Length = 629

 Score =  135 bits (340), Expect = 4e-30
 Identities = 67/85 (78%), Positives = 73/85 (85%)
 Frame = -3

Query: 257 LHELKRPDNIPRETAITILAGAGRIEEATWIFRQAFIEGEVKDISVFGCMIDLLSRNKKH 78
           LHELK PD+IPRETAI ILA AGRIEEATW+FRQAF  GEVKDISVFGCM+DL SRN+K 
Sbjct: 445 LHELKHPDSIPRETAIKILARAGRIEEATWVFRQAFDAGEVKDISVFGCMVDLFSRNRKP 504

Query: 77  AGVIEVFEKMRAAGYFPDAISISQV 3
           A VIEVFEKMR AGYFPD+  I+ V
Sbjct: 505 ANVIEVFEKMRGAGYFPDSNVIALV 529


>dbj|BAE98404.1| hypothetical protein [Arabidopsis thaliana]
          Length = 546

 Score =  134 bits (338), Expect = 6e-30
 Identities = 66/85 (77%), Positives = 73/85 (85%)
 Frame = -3

Query: 257 LHELKRPDNIPRETAITILAGAGRIEEATWIFRQAFIEGEVKDISVFGCMIDLLSRNKKH 78
           LHELK PDNIPRETAITILA AGR EEATW+FRQAF  GEVKDISVFGCMI+L SRN+++
Sbjct: 361 LHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRY 420

Query: 77  AGVIEVFEKMRAAGYFPDAISISQV 3
             VIEVFEKMR AGYFPD+  I+ V
Sbjct: 421 VNVIEVFEKMRTAGYFPDSNVIAMV 445


>ref|NP_198814.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75171449|sp|Q9FLD8.1|PP408_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g39980, chloroplastic; Flags: Precursor
           gi|10176990|dbj|BAB10222.1| unnamed protein product
           [Arabidopsis thaliana] gi|332007115|gb|AED94498.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 678

 Score =  134 bits (338), Expect = 6e-30
 Identities = 66/85 (77%), Positives = 73/85 (85%)
 Frame = -3

Query: 257 LHELKRPDNIPRETAITILAGAGRIEEATWIFRQAFIEGEVKDISVFGCMIDLLSRNKKH 78
           LHELK PDNIPRETAITILA AGR EEATW+FRQAF  GEVKDISVFGCMI+L SRN+++
Sbjct: 493 LHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRY 552

Query: 77  AGVIEVFEKMRAAGYFPDAISISQV 3
             VIEVFEKMR AGYFPD+  I+ V
Sbjct: 553 VNVIEVFEKMRTAGYFPDSNVIAMV 577


>ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297316573|gb|EFH46996.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 680

 Score =  133 bits (335), Expect = 1e-29
 Identities = 65/85 (76%), Positives = 73/85 (85%)
 Frame = -3

Query: 257 LHELKRPDNIPRETAITILAGAGRIEEATWIFRQAFIEGEVKDISVFGCMIDLLSRNKKH 78
           LHELK PDNIPRETAITILA AG  EEATW+FRQAF  GEVKDISVFGCMI+L SRN+++
Sbjct: 495 LHELKLPDNIPRETAITILAKAGSTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRY 554

Query: 77  AGVIEVFEKMRAAGYFPDAISISQV 3
             VIEVFEKMR AGYFPD+ +I+ V
Sbjct: 555 VNVIEVFEKMRTAGYFPDSNAIAMV 579