BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00026562
         (538 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

prf||1603356CM trnA intron ORF 109                                     83   3e-32
ref|YP_052806.1| hypothetical protein OrniCp080 [Oryza nivara] g...    83   7e-32
ref|XP_002863304.1| predicted protein [Arabidopsis lyrata subsp....   128   6e-28
ref|XP_002332896.1| predicted protein [Populus trichocarpa] gi|2...    66   5e-14
ref|XP_003604155.1| hypothetical protein MTR_4g006050 [Medicago ...    75   2e-13

>prf||1603356CM trnA intron ORF 109
          Length = 109

 Score = 82.8 bits (203), Expect(3) = 3e-32
 Identities = 39/40 (97%), Positives = 39/40 (97%)
 Frame = -2

Query: 132 FEILRRVALWRAQYDESCKLCSGGSYCLSLASMVESVGEA 13
           FEILRRVALWRAQYDESCKLCSGGSYCLSLASMVE VGEA
Sbjct: 70  FEILRRVALWRAQYDESCKLCSGGSYCLSLASMVEPVGEA 109



 Score = 51.6 bits (122), Expect(3) = 3e-32
 Identities = 28/41 (68%), Positives = 30/41 (73%), Gaps = 7/41 (17%)
 Frame = -3

Query: 314 VERISCPLLGWAVRVGEGQSLILKT-------KESGGKGGK 213
           VE IS PL GWAVRVGEGQSL+LKT       KESGGK G+
Sbjct: 1   VEHISRPLSGWAVRVGEGQSLVLKTSILKFKIKESGGKRGE 41



 Score = 49.7 bits (117), Expect(3) = 3e-32
 Identities = 25/35 (71%), Positives = 26/35 (74%)
 Frame = -1

Query: 238 KSRAEKGVKLSVPGSPVAGFSGTARILRMGFQLST 134
           K    K  +L VPGSPVAGF GT RILRMGFQLST
Sbjct: 33  KESGGKRGELPVPGSPVAGFPGTTRILRMGFQLST 67


>ref|YP_052806.1| hypothetical protein OrniCp080 [Oryza nivara]
           gi|50234049|ref|YP_052826.1| hypothetical protein
           OrniCp100 [Oryza nivara] gi|82517|pir||JQ0280
           hypothetical 12K protein (trnA intron) - rice
           chloroplast gi|49615053|dbj|BAD26836.1| unnamed protein
           product [Oryza nivara] gi|49615073|dbj|BAD26856.1|
           unnamed protein product [Oryza nivara]
          Length = 109

 Score = 82.8 bits (203), Expect(3) = 7e-32
 Identities = 39/40 (97%), Positives = 39/40 (97%)
 Frame = -2

Query: 132 FEILRRVALWRAQYDESCKLCSGGSYCLSLASMVESVGEA 13
           FEILRRVALWRAQYDESCKLCSGGSYCLSLASMVE VGEA
Sbjct: 70  FEILRRVALWRAQYDESCKLCSGGSYCLSLASMVEPVGEA 109



 Score = 50.4 bits (119), Expect(3) = 7e-32
 Identities = 27/41 (65%), Positives = 30/41 (73%), Gaps = 7/41 (17%)
 Frame = -3

Query: 314 VERISCPLLGWAVRVGEGQSLILKT-------KESGGKGGK 213
           +E IS PL GWAVRVGEGQSL+LKT       KESGGK G+
Sbjct: 1   MEHISRPLSGWAVRVGEGQSLVLKTSILKFKIKESGGKRGE 41



 Score = 49.7 bits (117), Expect(3) = 7e-32
 Identities = 25/35 (71%), Positives = 26/35 (74%)
 Frame = -1

Query: 238 KSRAEKGVKLSVPGSPVAGFSGTARILRMGFQLST 134
           K    K  +L VPGSPVAGF GT RILRMGFQLST
Sbjct: 33  KESGGKRGELPVPGSPVAGFPGTTRILRMGFQLST 67


>ref|XP_002863304.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297309138|gb|EFH39563.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 97

 Score =  128 bits (321), Expect = 6e-28
 Identities = 59/62 (95%), Positives = 60/62 (96%)
 Frame = -3

Query: 518 IPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMGRPHRLHPVGTTRSPQGRLRHPGVTD 339
           IPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSM RPHRLHPVGTTRSPQGRLR+PGV D
Sbjct: 36  IPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGRLRYPGVAD 95

Query: 338 RP 333
           RP
Sbjct: 96  RP 97


>ref|XP_002332896.1| predicted protein [Populus trichocarpa] gi|222833718|gb|EEE72195.1|
           predicted protein [Populus trichocarpa]
          Length = 106

 Score = 65.9 bits (159), Expect(2) = 5e-14
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = +1

Query: 325 GFYGRSVTPGCRRRPWGDLVVPTGWRRW 408
           GFYGRS TPGCRRRPWGDLVVPTGWRR+
Sbjct: 64  GFYGRSATPGCRRRPWGDLVVPTGWRRY 91



 Score = 36.6 bits (83), Expect(2) = 5e-14
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = +2

Query: 404 DGVGPWIFLPFAAFR 448
           DGVGPWIFLPF+AFR
Sbjct: 92  DGVGPWIFLPFSAFR 106


>ref|XP_003604155.1| hypothetical protein MTR_4g006050 [Medicago truncatula]
           gi|355505210|gb|AES86352.1| hypothetical protein
           MTR_4g006050 [Medicago truncatula]
          Length = 169

 Score = 75.1 bits (183), Expect(2) = 2e-13
 Identities = 32/36 (88%), Positives = 32/36 (88%)
 Frame = +1

Query: 328 FYGRSVTPGCRRRPWGDLVVPTGWRRWGRPMDFPSF 435
           FYGRS TPGCRRRPWGDLVVPTGWRR GR MDF SF
Sbjct: 3   FYGRSATPGCRRRPWGDLVVPTGWRRGGRSMDFLSF 38



 Score = 25.4 bits (54), Expect(2) = 2e-13
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +3

Query: 480 LFARANLILFPR 515
           LFARA+LILFPR
Sbjct: 42  LFARASLILFPR 53