BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00026560
         (1055 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI16283.3| unnamed protein product [Vitis vinifera]              439   e-121
ref|XP_002284994.1| PREDICTED: general transcription factor IIH ...   439   e-121
ref|XP_002331276.1| predicted protein [Populus trichocarpa] gi|2...   412   e-113
ref|XP_004169706.1| PREDICTED: general transcription factor IIH ...   405   e-111
ref|XP_004143721.1| PREDICTED: general transcription factor IIH ...   405   e-111

>emb|CBI16283.3| unnamed protein product [Vitis vinifera]
          Length = 494

 Score =  439 bits (1130), Expect = e-121
 Identities = 205/258 (79%), Positives = 227/258 (87%), Gaps = 1/258 (0%)
 Frame = +3

Query: 3    ECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGDVMETIQKCKISRIRCS 182
            ECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGD+METIQ+CK S+IRCS
Sbjct: 233  ECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGDIMETIQECKKSKIRCS 292

Query: 183  VVGLSAEIYICKHLCQETGGSYTVALDEPHFKXXXXXXXXXXXXXXXFAVSNLIKMGFPQ 362
            V+GLSAEI+IC+HLCQETGGSY+VALDE HFK               FA++NLIKMGFPQ
Sbjct: 293  VIGLSAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAIAEFAIANLIKMGFPQ 352

Query: 363  RAAEGVISICACHKEAKV-GGYTCPRCKARVCELPTECQICGLTLVSSPHLARSYHHLFP 539
            RAAEGVISIC+CHKEAKV GGYTCPRCKARVCELPTEC+ICGLTLVSSPHLARSYHHLFP
Sbjct: 353  RAAEGVISICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFP 412

Query: 540  ITPFNEVSSTTLNDPHIKLQRSCFGCQQTLPLQGKKPSLRVACPKCNQHFCLECDIYIHE 719
            I PF+EVS + LN+PH +  R+CFGCQ++L + G KP+L VACPKC QHFCL+CDIYIHE
Sbjct: 413  IPPFDEVSLSLLNNPHQRSSRACFGCQESLLIPGNKPTLCVACPKCKQHFCLDCDIYIHE 472

Query: 720  SLHNCPGCESLQHSKPVS 773
            SLHNCPGCES +HSK VS
Sbjct: 473  SLHNCPGCESFRHSKIVS 490


>ref|XP_002284994.1| PREDICTED: general transcription factor IIH subunit 2 [Vitis
           vinifera]
          Length = 433

 Score =  439 bits (1130), Expect = e-121
 Identities = 205/258 (79%), Positives = 227/258 (87%), Gaps = 1/258 (0%)
 Frame = +3

Query: 3   ECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGDVMETIQKCKISRIRCS 182
           ECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGD+METIQ+CK S+IRCS
Sbjct: 172 ECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGDIMETIQECKKSKIRCS 231

Query: 183 VVGLSAEIYICKHLCQETGGSYTVALDEPHFKXXXXXXXXXXXXXXXFAVSNLIKMGFPQ 362
           V+GLSAEI+IC+HLCQETGGSY+VALDE HFK               FA++NLIKMGFPQ
Sbjct: 232 VIGLSAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAIAEFAIANLIKMGFPQ 291

Query: 363 RAAEGVISICACHKEAKV-GGYTCPRCKARVCELPTECQICGLTLVSSPHLARSYHHLFP 539
           RAAEGVISIC+CHKEAKV GGYTCPRCKARVCELPTEC+ICGLTLVSSPHLARSYHHLFP
Sbjct: 292 RAAEGVISICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFP 351

Query: 540 ITPFNEVSSTTLNDPHIKLQRSCFGCQQTLPLQGKKPSLRVACPKCNQHFCLECDIYIHE 719
           I PF+EVS + LN+PH +  R+CFGCQ++L + G KP+L VACPKC QHFCL+CDIYIHE
Sbjct: 352 IPPFDEVSLSLLNNPHQRSSRACFGCQESLLIPGNKPTLCVACPKCKQHFCLDCDIYIHE 411

Query: 720 SLHNCPGCESLQHSKPVS 773
           SLHNCPGCES +HSK VS
Sbjct: 412 SLHNCPGCESFRHSKIVS 429


>ref|XP_002331276.1| predicted protein [Populus trichocarpa] gi|222873701|gb|EEF10832.1|
           predicted protein [Populus trichocarpa]
          Length = 412

 Score =  412 bits (1058), Expect = e-113
 Identities = 191/254 (75%), Positives = 219/254 (86%), Gaps = 1/254 (0%)
 Frame = +3

Query: 3   ECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGDVMETIQKCKISRIRCS 182
           ECSGDSSLQNAL+LVH YL++IPSYG+REVLILYSAL+TCDPGD+METIQKCK S++RCS
Sbjct: 159 ECSGDSSLQNALELVHEYLDKIPSYGNREVLILYSALTTCDPGDIMETIQKCKKSKMRCS 218

Query: 183 VVGLSAEIYICKHLCQETGGSYTVALDEPHFKXXXXXXXXXXXXXXXFAVSNLIKMGFPQ 362
           V+GLSAE++ICKHLCQETGG Y+VALDE HFK               FA++NLIKMGFPQ
Sbjct: 219 VIGLSAEMFICKHLCQETGGLYSVALDESHFKELILEHAPPPPAIAEFAIANLIKMGFPQ 278

Query: 363 RAAEGVISICACHKEAKVG-GYTCPRCKARVCELPTECQICGLTLVSSPHLARSYHHLFP 539
           RAAEG ISIC+CHKE+KVG GY CPRCKARVCELPTEC+ICGLTLVSSPHLARSYHHLFP
Sbjct: 279 RAAEGSISICSCHKESKVGEGYICPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFP 338

Query: 540 ITPFNEVSSTTLNDPHIKLQRSCFGCQQTLPLQGKKPSLRVACPKCNQHFCLECDIYIHE 719
           I PF+EV  +  N+PH + Q++CFGCQQ+L   G KPSL+VACPKC Q+FCL+CDIYIHE
Sbjct: 339 IAPFDEVKPSRQNEPHRRSQKTCFGCQQSLVNPGNKPSLQVACPKCKQYFCLDCDIYIHE 398

Query: 720 SLHNCPGCESLQHS 761
           SLHNCPGCESL+ S
Sbjct: 399 SLHNCPGCESLRAS 412


>ref|XP_004169706.1| PREDICTED: general transcription factor IIH subunit 2-like, partial
           [Cucumis sativus]
          Length = 329

 Score =  405 bits (1042), Expect = e-111
 Identities = 186/257 (72%), Positives = 214/257 (83%), Gaps = 3/257 (1%)
 Frame = +3

Query: 3   ECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGDVMETIQKCKISRIRCS 182
           ECSGD+SLQN L+LVH YLNQIPSYGHREVL+LYSAL++CDPGD+MET+QKCK S+IRCS
Sbjct: 67  ECSGDASLQNGLELVHSYLNQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCS 126

Query: 183 VVGLSAEIYICKHLCQETGGSYTVALDEPHFKXXXXXXXXXXXXXXXFAVSNLIKMGFPQ 362
           V+GL+AEI+IC+HLCQETGGSY+VALDE HFK                A+ NLIKMGFPQ
Sbjct: 127 VIGLTAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQ 186

Query: 363 RAAEGVISICACHKEAKV-GGYTCPRCKARVCELPTECQICGLTLVSSPHLARSYHHLFP 539
           RAAE  I+IC+CHKEAKV GGYTCPRCKARVCELPTEC+ICGLTL+SSPHLARSYHHLFP
Sbjct: 187 RAAESSIAICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFP 246

Query: 540 ITPFNEVSSTTLNDPHIKLQRSCFGCQQTL--PLQGKKPSLRVACPKCNQHFCLECDIYI 713
           I PF+EVS    +DP  +L + CFGCQ++L  P  G  PS+RV+CPKC QHFCL+CDIYI
Sbjct: 247 IIPFDEVSDKVFHDPRHQLPKVCFGCQESLMNPSTGNSPSIRVSCPKCKQHFCLDCDIYI 306

Query: 714 HESLHNCPGCESLQHSK 764
           HESLHNCPGCES +  K
Sbjct: 307 HESLHNCPGCESFRRPK 323


>ref|XP_004143721.1| PREDICTED: general transcription factor IIH subunit 2-like [Cucumis
           sativus]
          Length = 423

 Score =  405 bits (1042), Expect = e-111
 Identities = 186/257 (72%), Positives = 214/257 (83%), Gaps = 3/257 (1%)
 Frame = +3

Query: 3   ECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGDVMETIQKCKISRIRCS 182
           ECSGD+SLQN L+LVH YLNQIPSYGHREVL+LYSAL++CDPGD+MET+QKCK S+IRCS
Sbjct: 161 ECSGDASLQNGLELVHSYLNQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCS 220

Query: 183 VVGLSAEIYICKHLCQETGGSYTVALDEPHFKXXXXXXXXXXXXXXXFAVSNLIKMGFPQ 362
           V+GL+AEI+IC+HLCQETGGSY+VALDE HFK                A+ NLIKMGFPQ
Sbjct: 221 VIGLTAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQ 280

Query: 363 RAAEGVISICACHKEAKV-GGYTCPRCKARVCELPTECQICGLTLVSSPHLARSYHHLFP 539
           RAAE  I+IC+CHKEAKV GGYTCPRCKARVCELPTEC+ICGLTL+SSPHLARSYHHLFP
Sbjct: 281 RAAESSIAICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFP 340

Query: 540 ITPFNEVSSTTLNDPHIKLQRSCFGCQQTL--PLQGKKPSLRVACPKCNQHFCLECDIYI 713
           I PF+EVS    +DP  +L + CFGCQ++L  P  G  PS+RV+CPKC QHFCL+CDIYI
Sbjct: 341 IIPFDEVSDKVFHDPRHQLPKVCFGCQESLMNPSTGNSPSIRVSCPKCKQHFCLDCDIYI 400

Query: 714 HESLHNCPGCESLQHSK 764
           HESLHNCPGCES +  K
Sbjct: 401 HESLHNCPGCESFRRPK 417