BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00026557
         (416 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331415.1| predicted protein [Populus trichocarpa] gi|2...   192   3e-47
ref|XP_003610281.1| Pentatricopeptide repeat-containing protein ...   150   8e-35
ref|XP_002866951.1| pentatricopeptide repeat-containing protein ...   150   1e-34
ref|XP_003635569.1| PREDICTED: pentatricopeptide repeat-containi...   149   2e-34
emb|CBI25911.3| unnamed protein product [Vitis vinifera]              149   2e-34

>ref|XP_002331415.1| predicted protein [Populus trichocarpa] gi|222873629|gb|EEF10760.1|
           predicted protein [Populus trichocarpa]
          Length = 458

 Score =  192 bits (487), Expect = 3e-47
 Identities = 94/138 (68%), Positives = 110/138 (79%)
 Frame = +2

Query: 2   KQAAMVRSLMEGRGLVKEPGWSQIEVDGLLHVFLVGDRSHDRSVEIYXXXXXXXXXXXXI 181
           K+AA+ RSLM  RGLVK PGWSQ+E++G +HVF+ GDRSH +S++IY             
Sbjct: 306 KEAAVTRSLMIDRGLVKAPGWSQVEINGSVHVFIAGDRSHTQSIDIYKKLEEINLKLAEA 365

Query: 182 GYVAETQMVIHDLEKEDKEEALGVHSERLAVAFGLLSTEPGSTLRIMKNLRTCTDCHTAL 361
           GYV ET  VIHDLE+E+KEEAL VHSERLA+AFGL+STE GSTLRIMKN RTC DCH+AL
Sbjct: 366 GYVPETDTVIHDLEREEKEEALKVHSERLAIAFGLISTEAGSTLRIMKNHRTCVDCHSAL 425

Query: 362 KFISKITCRHLIVRDGNR 415
           KFISKIT RHLIVRDG+R
Sbjct: 426 KFISKITGRHLIVRDGSR 443


>ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355511336|gb|AES92478.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  150 bits (380), Expect = 8e-35
 Identities = 73/137 (53%), Positives = 98/137 (71%)
 Frame = +2

Query: 5    QAAMVRSLMEGRGLVKEPGWSQIEVDGLLHVFLVGDRSHDRSVEIYXXXXXXXXXXXXIG 184
            +AA +R +++ R L K PG + IEV+G  HVF+ GDRSH  + +IY            +G
Sbjct: 632  KAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSHSHATDIYAKLEKLTGKMREMG 691

Query: 185  YVAETQMVIHDLEKEDKEEALGVHSERLAVAFGLLSTEPGSTLRIMKNLRTCTDCHTALK 364
            Y AET   +HD+E+E+KE A+ VHSE+LA+AFGL++TEPG+ +RI+KNLR C DCHTA K
Sbjct: 692  YQAETVPALHDVEEEEKELAVNVHSEKLAIAFGLITTEPGNEIRIIKNLRVCLDCHTATK 751

Query: 365  FISKITCRHLIVRDGNR 415
            FISKIT R ++VRD NR
Sbjct: 752  FISKITERVIVVRDANR 768


>ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297312787|gb|EFH43210.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 630

 Score =  150 bits (378), Expect = 1e-34
 Identities = 74/135 (54%), Positives = 94/135 (69%)
 Frame = +2

Query: 11  AMVRSLMEGRGLVKEPGWSQIEVDGLLHVFLVGDRSHDRSVEIYXXXXXXXXXXXXIGYV 190
           A VR+LM+ +G+VKEPG S IE+D  +H F  GDR H +S EIY             GYV
Sbjct: 481 AKVRNLMKEKGIVKEPGISTIEIDNKVHEFRAGDREHLKSKEIYTMLRKMSERIKSHGYV 540

Query: 191 AETQMVIHDLEKEDKEEALGVHSERLAVAFGLLSTEPGSTLRIMKNLRTCTDCHTALKFI 370
             T  V+HDLE+ +KE +L VHSERLA+A+GL+ST+PGS L+I KNLR C+DCHT  K I
Sbjct: 541 PNTNTVLHDLEETEKERSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLI 600

Query: 371 SKITCRHLIVRDGNR 415
           SKIT R +++RD NR
Sbjct: 601 SKITGRKIVMRDRNR 615


>ref|XP_003635569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 287

 Score =  149 bits (376), Expect = 2e-34
 Identities = 73/135 (54%), Positives = 95/135 (70%)
 Frame = +2

Query: 11  AMVRSLMEGRGLVKEPGWSQIEVDGLLHVFLVGDRSHDRSVEIYXXXXXXXXXXXXIGYV 190
           A VR +M+ RG+VK+PG S IE+   +HVFLVGD SH +S EI+             GYV
Sbjct: 138 AEVRKVMDARGVVKKPGLSWIEIKREVHVFLVGDTSHAKSKEIHEFLGKLSKRMKEEGYV 197

Query: 191 AETQMVIHDLEKEDKEEALGVHSERLAVAFGLLSTEPGSTLRIMKNLRTCTDCHTALKFI 370
            +T  V+HD+E+E KE+ L  HSE+LAVAFG++ST  G+ +++ KNLRTC DCHTA+KFI
Sbjct: 198 PDTNFVLHDVEEEQKEQNLSYHSEKLAVAFGIISTPAGTLIKVFKNLRTCVDCHTAIKFI 257

Query: 371 SKITCRHLIVRDGNR 415
           SKI  R +IVRD NR
Sbjct: 258 SKIAKRKIIVRDSNR 272


>emb|CBI25911.3| unnamed protein product [Vitis vinifera]
          Length = 288

 Score =  149 bits (376), Expect = 2e-34
 Identities = 73/135 (54%), Positives = 95/135 (70%)
 Frame = +2

Query: 11  AMVRSLMEGRGLVKEPGWSQIEVDGLLHVFLVGDRSHDRSVEIYXXXXXXXXXXXXIGYV 190
           A VR +M+ RG+VK+PG S IE+   +HVFLVGD SH +S EI+             GYV
Sbjct: 139 AEVRKVMDARGVVKKPGLSWIEIKREVHVFLVGDTSHAKSKEIHEFLGKLSKRMKEEGYV 198

Query: 191 AETQMVIHDLEKEDKEEALGVHSERLAVAFGLLSTEPGSTLRIMKNLRTCTDCHTALKFI 370
            +T  V+HD+E+E KE+ L  HSE+LAVAFG++ST  G+ +++ KNLRTC DCHTA+KFI
Sbjct: 199 PDTNFVLHDVEEEQKEQNLSYHSEKLAVAFGIISTPAGTLIKVFKNLRTCVDCHTAIKFI 258

Query: 371 SKITCRHLIVRDGNR 415
           SKI  R +IVRD NR
Sbjct: 259 SKIAKRKIIVRDSNR 273