BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00026542
         (462 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29194.3| unnamed protein product [Vitis vinifera]              135   3e-30
ref|XP_002269121.1| PREDICTED: pentatricopeptide repeat-containi...   135   3e-30
sp|O49680.2|PP324_ARATH RecName: Full=Pentatricopeptide repeat-c...   125   4e-27
ref|NP_193657.1| pentatricopeptide repeat-containing protein [Ar...   125   4e-27
ref|XP_002867948.1| pentatricopeptide repeat-containing protein ...   123   1e-26

>emb|CBI29194.3| unnamed protein product [Vitis vinifera]
          Length = 862

 Score =  135 bits (341), Expect = 3e-30
 Identities = 59/101 (58%), Positives = 78/101 (77%)
 Frame = +1

Query: 1    GRSGKLSEAYEFIKDIQPQQQAGVWGALLSDCKYHGDIKMGKQVAEHLFNIDPENAGYYV 180
            GR+G+L EAYEFI+ +  Q + GVWGALLS C YHGD+KMG++VAE LF ++PEN GYY+
Sbjct: 747  GRAGRLGEAYEFIRQMPTQPEPGVWGALLSACSYHGDLKMGREVAELLFELEPENVGYYI 806

Query: 181  SLFNIYTTDGRWSDAMDIRKNFQDRMLRKPPGYSLIDICSG 303
            SL N+Y   GRW DA+++R+  QD+ L+KP  YSLID+  G
Sbjct: 807  SLSNMYVAAGRWKDAVELRRIIQDKGLKKPAAYSLIDVGMG 847


>ref|XP_002269121.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
            mitochondrial [Vitis vinifera]
          Length = 828

 Score =  135 bits (341), Expect = 3e-30
 Identities = 59/101 (58%), Positives = 78/101 (77%)
 Frame = +1

Query: 1    GRSGKLSEAYEFIKDIQPQQQAGVWGALLSDCKYHGDIKMGKQVAEHLFNIDPENAGYYV 180
            GR+G+L EAYEFI+ +  Q + GVWGALLS C YHGD+KMG++VAE LF ++PEN GYY+
Sbjct: 728  GRAGRLGEAYEFIRQMPTQPEPGVWGALLSACSYHGDLKMGREVAELLFELEPENVGYYI 787

Query: 181  SLFNIYTTDGRWSDAMDIRKNFQDRMLRKPPGYSLIDICSG 303
            SL N+Y   GRW DA+++R+  QD+ L+KP  YSLID+  G
Sbjct: 788  SLSNMYVAAGRWKDAVELRRIIQDKGLKKPAAYSLIDVGMG 828


>sp|O49680.2|PP324_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19220,
            mitochondrial; Flags: Precursor
          Length = 951

 Score =  125 bits (314), Expect = 4e-27
 Identities = 58/98 (59%), Positives = 73/98 (74%)
 Frame = +1

Query: 1    GRSGKLSEAYEFIKDIQPQQQAGVWGALLSDCKYHGDIKMGKQVAEHLFNIDPENAGYYV 180
            GR+GKL EAYEFI  I   Q+AGVWGALLS C YHGD K+GK+VAE LF ++P+NA YY+
Sbjct: 847  GRAGKLREAYEFITGIGEPQKAGVWGALLSACNYHGDTKLGKEVAEVLFEMEPDNASYYI 906

Query: 181  SLFNIYTTDGRWSDAMDIRKNFQDRMLRKPPGYSLIDI 294
            SL N Y   G W +A+ +RK  +D  L+K PGYS+ID+
Sbjct: 907  SLANTYVGLGGWEEAVRLRKMVEDNALKKLPGYSVIDV 944


>ref|NP_193657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|2828297|emb|CAA16711.1| putative protein [Arabidopsis
            thaliana] gi|7268717|emb|CAB78924.1| putative protein
            [Arabidopsis thaliana] gi|332658761|gb|AEE84161.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 932

 Score =  125 bits (314), Expect = 4e-27
 Identities = 58/98 (59%), Positives = 73/98 (74%)
 Frame = +1

Query: 1    GRSGKLSEAYEFIKDIQPQQQAGVWGALLSDCKYHGDIKMGKQVAEHLFNIDPENAGYYV 180
            GR+GKL EAYEFI  I   Q+AGVWGALLS C YHGD K+GK+VAE LF ++P+NA YY+
Sbjct: 828  GRAGKLREAYEFITGIGEPQKAGVWGALLSACNYHGDTKLGKEVAEVLFEMEPDNASYYI 887

Query: 181  SLFNIYTTDGRWSDAMDIRKNFQDRMLRKPPGYSLIDI 294
            SL N Y   G W +A+ +RK  +D  L+K PGYS+ID+
Sbjct: 888  SLANTYVGLGGWEEAVRLRKMVEDNALKKLPGYSVIDV 925


>ref|XP_002867948.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297313784|gb|EFH44207.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 919

 Score =  123 bits (309), Expect = 1e-26
 Identities = 58/101 (57%), Positives = 73/101 (72%)
 Frame = +1

Query: 1    GRSGKLSEAYEFIKDIQPQQQAGVWGALLSDCKYHGDIKMGKQVAEHLFNIDPENAGYYV 180
            GR+GKL EAYEFI  I   Q+AGVWGALLS C YHGD K+G +VAE LF ++P+NA YY+
Sbjct: 819  GRAGKLKEAYEFIIGIGEPQKAGVWGALLSACNYHGDTKLGTEVAEVLFEMEPDNASYYI 878

Query: 181  SLFNIYTTDGRWSDAMDIRKNFQDRMLRKPPGYSLIDICSG 303
            SL N Y   G W +A+ +RK  +D  L+K PGYS+ID+  G
Sbjct: 879  SLANTYVGLGGWDEAVRLRKIVEDNALKKLPGYSVIDVSVG 919