BLASTX nr result

ID: Coptis23_contig00026537 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00026537
         (318 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282986.1| PREDICTED: uncharacterized protein LOC100267...   103   1e-20
emb|CAN61027.1| hypothetical protein VITISV_001147 [Vitis vinifera]   103   1e-20
ref|XP_002510168.1| conserved hypothetical protein [Ricinus comm...    98   8e-19
ref|XP_004141390.1| PREDICTED: transcription factor LHW-like [Cu...    64   1e-08
ref|XP_003550324.1| PREDICTED: uncharacterized protein LOC100807...    59   4e-07

>ref|XP_002282986.1| PREDICTED: uncharacterized protein LOC100267842 [Vitis vinifera]
           gi|302142275|emb|CBI19478.3| unnamed protein product
           [Vitis vinifera]
          Length = 380

 Score =  103 bits (257), Expect = 1e-20
 Identities = 64/113 (56%), Positives = 75/113 (66%), Gaps = 8/113 (7%)
 Frame = +1

Query: 1   KRCYGERLDETPSKSMNLGWNNPQTVSNNXXXXXXXFPFWSIPPLLPTMSCSLGALLSKL 180
           KR Y +R  E P KS+NLGWN+PQ               WSIPPLLPTMSCSLGALLSKL
Sbjct: 235 KRLYSDRPGEPPIKSINLGWNSPQNGVAGPA-------IWSIPPLLPTMSCSLGALLSKL 287

Query: 181 PSVIPSNNSTEAPDTTLDINN-----DSSSRRSKVDD-GGID--QISHIKLES 315
           PSV+PS N  EA DTTL  NN     +S+S+R KV+  GG++  QI+ IKLES
Sbjct: 288 PSVLPSYNHIEAHDTTLLSNNSNSNINSTSQRLKVNGVGGLNEIQIAGIKLES 340


>emb|CAN61027.1| hypothetical protein VITISV_001147 [Vitis vinifera]
          Length = 387

 Score =  103 bits (257), Expect = 1e-20
 Identities = 64/113 (56%), Positives = 75/113 (66%), Gaps = 8/113 (7%)
 Frame = +1

Query: 1   KRCYGERLDETPSKSMNLGWNNPQTVSNNXXXXXXXFPFWSIPPLLPTMSCSLGALLSKL 180
           KR Y +R  E P KS+NLGWN+PQ               WSIPPLLPTMSCSLGALLSKL
Sbjct: 242 KRLYSDRPGEPPIKSINLGWNSPQNGVAGPA-------IWSIPPLLPTMSCSLGALLSKL 294

Query: 181 PSVIPSNNSTEAPDTTLDINN-----DSSSRRSKVDD-GGID--QISHIKLES 315
           PSV+PS N  EA DTTL  NN     +S+S+R KV+  GG++  QI+ IKLES
Sbjct: 295 PSVLPSYNHIEAHDTTLLSNNSNSNINSTSQRLKVNGVGGLNEIQIAGIKLES 347


>ref|XP_002510168.1| conserved hypothetical protein [Ricinus communis]
           gi|223550869|gb|EEF52355.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 369

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 61/113 (53%), Positives = 74/113 (65%), Gaps = 7/113 (6%)
 Frame = +1

Query: 1   KRCYGERLDETPSKSMNLGWNNPQTVSNNXXXXXXXFPFWSIPPLLPTMSCSLGALLSKL 180
           KR + ER D+ P KS++LGWNNPQ             P WSIP LLPTMSCSLGALLSKL
Sbjct: 246 KRLFDERFDDNPIKSISLGWNNPQN-------GIAGAPIWSIPTLLPTMSCSLGALLSKL 298

Query: 181 PSVIPSN-NSTEAPDTTLDINNDSSSRR---SKVDDGGIDQ---ISHIKLESC 318
           PSV+PS+  S EA DT L +N ++S+RR   SKVD  G+ +    S+  LESC
Sbjct: 299 PSVVPSSCGSIEAFDTAL-VNCNNSNRRSQSSKVDTCGLAREVPPSNRNLESC 350


>ref|XP_004141390.1| PREDICTED: transcription factor LHW-like [Cucumis sativus]
           gi|449515101|ref|XP_004164588.1| PREDICTED:
           transcription factor LHW-like [Cucumis sativus]
          Length = 375

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 38/106 (35%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
 Frame = +1

Query: 1   KRCYGERLDETPSKSMNLGWNNPQTVSNNXXXXXXXFPFWSIPPLLPTMSCSLGALLSKL 180
           KR +   LDE+P KS+NLGWN PQ             P W IPPLLP+ SCSLG   S  
Sbjct: 236 KRLFSSMLDESPIKSINLGWNTPQHSLTTGS------PVWPIPPLLPSTSCSLGTFKSNF 289

Query: 181 PS-VIPSNNSTEAPDTTLDINNDSSSRRSKVDDGGIDQISHIKLES 315
           PS   P     + PD    ++ +  +  +K  +      S +K+E+
Sbjct: 290 PSNSTPPCEVNDRPDPVQHMSINHPTPNTKASN------SEVKIET 329


>ref|XP_003550324.1| PREDICTED: uncharacterized protein LOC100807289 [Glycine max]
          Length = 204

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 31/61 (50%), Positives = 35/61 (57%)
 Frame = +1

Query: 43  SMNLGWNNPQTVSNNXXXXXXXFPFWSIPPLLPTMSCSLGALLSKLPSVIPSNNSTEAPD 222
           S+NLG N P     N        P WS PP LP MSCS GA+LSKLP V PSNN  +  +
Sbjct: 117 SINLGRNPPP---QNGTTTTQGSPLWSAPPSLPNMSCSFGAMLSKLPYVTPSNNPPQVLE 173

Query: 223 T 225
           T
Sbjct: 174 T 174


Top