BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00026000
         (361 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40152.3| unnamed protein product [Vitis vinifera]              174   9e-42
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   174   9e-42
ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin...   171   7e-41
ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocar...   169   2e-40
ref|XP_002299208.1| RNA polymerase IV subunit [Populus trichocar...   169   3e-40

>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  174 bits (440), Expect = 9e-42
 Identities = 87/112 (77%), Positives = 92/112 (82%)
 Frame = +1

Query: 25  GIRKEVGEYATKAWFEKMKTFFISKGSGYSSRSVITGDAYKRVNEIGLPLEIAQRITFEE 204
           G  KE  E +TKAW EKM+T FI KGSG+SSRSVITGDAYKRVNEIGLP EIAQRITFEE
Sbjct: 354 GSSKEPNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPFEIAQRITFEE 413

Query: 205 KVTERNKVHLQQLVDKKLCLTYSDGASMYSLREGSKGHTILRVGQVVHRRIM 360
           +V   N  HLQ LVD+KLCLTY DG S YSLREGSKGHT LR GQVVHRRIM
Sbjct: 414 RVNVHNMKHLQNLVDEKLCLTYRDGLSTYSLREGSKGHTFLRPGQVVHRRIM 465


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  174 bits (440), Expect = 9e-42
 Identities = 87/112 (77%), Positives = 92/112 (82%)
 Frame = +1

Query: 25  GIRKEVGEYATKAWFEKMKTFFISKGSGYSSRSVITGDAYKRVNEIGLPLEIAQRITFEE 204
           G  KE  E +TKAW EKM+T FI KGSG+SSRSVITGDAYKRVNEIGLP EIAQRITFEE
Sbjct: 294 GSSKEPNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPFEIAQRITFEE 353

Query: 205 KVTERNKVHLQQLVDKKLCLTYSDGASMYSLREGSKGHTILRVGQVVHRRIM 360
           +V   N  HLQ LVD+KLCLTY DG S YSLREGSKGHT LR GQVVHRRIM
Sbjct: 354 RVNVHNMKHLQNLVDEKLCLTYRDGLSTYSLREGSKGHTFLRPGQVVHRRIM 405


>ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 991

 Score =  171 bits (432), Expect = 7e-41
 Identities = 84/120 (70%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
 Frame = +1

Query: 4   SRDI-KMSGIRKEVGEYATKAWFEKMKTFFISKGSGYSSRSVITGDAYKRVNEIGLPLEI 180
           +RD+ +  G+ KE  + +TKAW EKM+T FI KGSG+SSRSVITGDAYK VNEIG+P EI
Sbjct: 288 ARDVGERFGVHKESNDSSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKCVNEIGIPSEI 347

Query: 181 AQRITFEEKVTERNKVHLQQLVDKKLCLTYSDGASMYSLREGSKGHTILRVGQVVHRRIM 360
           AQRITFEE+V   N  +LQ+LVD KLCLTY DG+S YSLREGSKGHT LR+GQ+VHRRIM
Sbjct: 348 AQRITFEERVNAHNMQYLQELVDNKLCLTYRDGSSTYSLREGSKGHTFLRLGQIVHRRIM 407


>ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocarpa]
           gi|222841357|gb|EEE78904.1| RNA polymerase IV subunit
           [Populus trichocarpa]
          Length = 924

 Score =  169 bits (428), Expect = 2e-40
 Identities = 84/120 (70%), Positives = 97/120 (80%), Gaps = 1/120 (0%)
 Frame = +1

Query: 4   SRDIKMS-GIRKEVGEYATKAWFEKMKTFFISKGSGYSSRSVITGDAYKRVNEIGLPLEI 180
           SRD+    G++KE  E  TKAW EKM+T FI KGSG+SSRSVITGDAY  VN++G+P EI
Sbjct: 288 SRDVDTRYGVKKESSESTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYTLVNQVGIPYEI 347

Query: 181 AQRITFEEKVTERNKVHLQQLVDKKLCLTYSDGASMYSLREGSKGHTILRVGQVVHRRIM 360
           AQRITFEE+V+  N  +LQ+LVD KLCLTY DG+S YSLREGSKGHT LR GQVVHRRIM
Sbjct: 348 AQRITFEERVSVHNMRYLQELVDNKLCLTYKDGSSTYSLREGSKGHTFLRPGQVVHRRIM 407


>ref|XP_002299208.1| RNA polymerase IV subunit [Populus trichocarpa]
           gi|222846466|gb|EEE84013.1| RNA polymerase IV subunit
           [Populus trichocarpa]
          Length = 842

 Score =  169 bits (427), Expect = 3e-40
 Identities = 82/120 (68%), Positives = 100/120 (83%), Gaps = 1/120 (0%)
 Frame = +1

Query: 4   SRDIKMS-GIRKEVGEYATKAWFEKMKTFFISKGSGYSSRSVITGDAYKRVNEIGLPLEI 180
           SRD+ +  G++K+  E +TKAW EKM+T FI KGSG+SSRSVITGDAY +VN++G+P EI
Sbjct: 206 SRDVDVRYGVKKDSSESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYTKVNQVGIPYEI 265

Query: 181 AQRITFEEKVTERNKVHLQQLVDKKLCLTYSDGASMYSLREGSKGHTILRVGQVVHRRIM 360
           AQRITFEE+V+  N  +LQ+LVD KLCLTY DG+S YSLREGSKGHT LR GQVVHRRI+
Sbjct: 266 AQRITFEERVSVHNMRYLQELVDNKLCLTYRDGSSTYSLREGSKGHTFLRPGQVVHRRII 325