BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025984
         (341 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_189031.1| DNA topoisomerase 2 [Arabidopsis thaliana] gi|1...   167   1e-39
ref|NP_001118686.1| DNA topoisomerase 2 [Arabidopsis thaliana] g...   167   1e-39
emb|CBI24922.3| unnamed protein product [Vitis vinifera]              166   2e-39
ref|XP_002274267.1| PREDICTED: DNA topoisomerase 2-like [Vitis v...   166   2e-39
dbj|BAD07880.1| putative DNA topoisomerase II [Oryza sativa Japo...   162   2e-38

>ref|NP_189031.1| DNA topoisomerase 2 [Arabidopsis thaliana]
           gi|1174740|sp|P30182.2|TOP2_ARATH RecName: Full=DNA
           topoisomerase 2; AltName: Full=DNA topoisomerase II
           gi|474890|gb|AAA65448.1| topoisomerase II [Arabidopsis
           thaliana] gi|9294657|dbj|BAB03006.1| DNA topoisomerase
           II [Arabidopsis thaliana] gi|332643305|gb|AEE76826.1|
           DNA topoisomerase 2 [Arabidopsis thaliana]
          Length = 1473

 Score =  167 bits (422), Expect = 1e-39
 Identities = 84/115 (73%), Positives = 92/115 (80%), Gaps = 2/115 (1%)
 Frame = +2

Query: 2   SDYVDLYLDSANKDN-EDKLPRVMEKVNDRWEICVSLSEGQFQQVSFVNSIATIKGGTHV 178
           +DYVDLYL +ANK   ED LPR+ EKVNDRWE+CVSLSEGQFQQVSFVNSIATIKGGTHV
Sbjct: 270 TDYVDLYLSAANKSRTEDPLPRLTEKVNDRWEVCVSLSEGQFQQVSFVNSIATIKGGTHV 329

Query: 179 DYVTNQIANH-XXXXXXXXXXXXXXAHTVKSHMWIFVNALIDNPAFDSQTKETLT 340
           DYVT+QI NH               AH VK+H+W+FVNALIDNPAFDSQTKETLT
Sbjct: 330 DYVTSQITNHIVAAVNKKNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLT 384


>ref|NP_001118686.1| DNA topoisomerase 2 [Arabidopsis thaliana]
           gi|332643306|gb|AEE76827.1| DNA topoisomerase 2
           [Arabidopsis thaliana]
          Length = 1438

 Score =  167 bits (422), Expect = 1e-39
 Identities = 84/115 (73%), Positives = 92/115 (80%), Gaps = 2/115 (1%)
 Frame = +2

Query: 2   SDYVDLYLDSANKDN-EDKLPRVMEKVNDRWEICVSLSEGQFQQVSFVNSIATIKGGTHV 178
           +DYVDLYL +ANK   ED LPR+ EKVNDRWE+CVSLSEGQFQQVSFVNSIATIKGGTHV
Sbjct: 270 TDYVDLYLSAANKSRTEDPLPRLTEKVNDRWEVCVSLSEGQFQQVSFVNSIATIKGGTHV 329

Query: 179 DYVTNQIANH-XXXXXXXXXXXXXXAHTVKSHMWIFVNALIDNPAFDSQTKETLT 340
           DYVT+QI NH               AH VK+H+W+FVNALIDNPAFDSQTKETLT
Sbjct: 330 DYVTSQITNHIVAAVNKKNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLT 384


>emb|CBI24922.3| unnamed protein product [Vitis vinifera]
          Length = 1452

 Score =  166 bits (419), Expect = 2e-39
 Identities = 83/114 (72%), Positives = 91/114 (79%), Gaps = 1/114 (0%)
 Frame = +2

Query: 2   SDYVDLYLDSANKDNEDKLPRVMEKVNDRWEICVSLSEGQFQQVSFVNSIATIKGGTHVD 181
           +DYV+LYL SA K   + LPR+ EKVN+RWEICVSLSEGQFQQVSFVNSIATIKGGTHVD
Sbjct: 265 NDYVNLYLQSAAKSRPESLPRIAEKVNERWEICVSLSEGQFQQVSFVNSIATIKGGTHVD 324

Query: 182 YVTNQIANH-XXXXXXXXXXXXXXAHTVKSHMWIFVNALIDNPAFDSQTKETLT 340
           YVTNQIAN                AHTVK+H+W+FVNALIDNPAFDSQTKETLT
Sbjct: 325 YVTNQIANFVMSIVNKKNKNANIKAHTVKNHLWVFVNALIDNPAFDSQTKETLT 378


>ref|XP_002274267.1| PREDICTED: DNA topoisomerase 2-like [Vitis vinifera]
          Length = 1489

 Score =  166 bits (419), Expect = 2e-39
 Identities = 83/114 (72%), Positives = 91/114 (79%), Gaps = 1/114 (0%)
 Frame = +2

Query: 2   SDYVDLYLDSANKDNEDKLPRVMEKVNDRWEICVSLSEGQFQQVSFVNSIATIKGGTHVD 181
           +DYV+LYL SA K   + LPR+ EKVN+RWEICVSLSEGQFQQVSFVNSIATIKGGTHVD
Sbjct: 265 NDYVNLYLQSAAKSRPESLPRIAEKVNERWEICVSLSEGQFQQVSFVNSIATIKGGTHVD 324

Query: 182 YVTNQIANH-XXXXXXXXXXXXXXAHTVKSHMWIFVNALIDNPAFDSQTKETLT 340
           YVTNQIAN                AHTVK+H+W+FVNALIDNPAFDSQTKETLT
Sbjct: 325 YVTNQIANFVMSIVNKKNKNANIKAHTVKNHLWVFVNALIDNPAFDSQTKETLT 378


>dbj|BAD07880.1| putative DNA topoisomerase II [Oryza sativa Japonica Group]
          Length = 1525

 Score =  162 bits (411), Expect = 2e-38
 Identities = 82/116 (70%), Positives = 91/116 (78%), Gaps = 3/116 (2%)
 Frame = +2

Query: 2   SDYVDLYLDSANKDNED--KLPRVMEKVNDRWEICVSLSEGQFQQVSFVNSIATIKGGTH 175
           SDYV LY+ SA+KD +D  +LP + +KVNDRWE+CVSLSEGQFQQVSFVN IATIKGGTH
Sbjct: 267 SDYVKLYIKSASKDRDDVNELPSISQKVNDRWEVCVSLSEGQFQQVSFVNRIATIKGGTH 326

Query: 176 VDYVTNQIANH-XXXXXXXXXXXXXXAHTVKSHMWIFVNALIDNPAFDSQTKETLT 340
           VDYVTNQIA H               AH VKSH+W+FVNALIDNPAFDSQTKETLT
Sbjct: 327 VDYVTNQIATHVMNIVNKRNKNAHMKAHNVKSHLWVFVNALIDNPAFDSQTKETLT 382