BLASTX nr result

ID: Coptis23_contig00025946 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025946
         (545 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002324677.1| auxin efflux carrier component [Populus tric...   251   7e-65
ref|XP_002266059.1| PREDICTED: auxin efflux carrier component 2 ...   242   3e-62
ref|NP_001237559.1| auxin efflux carrier protein 3 [Glycine max]...   239   2e-61
emb|CAN70111.1| hypothetical protein VITISV_032889 [Vitis vinifera]   239   3e-61
ref|NP_001238365.1| auxin efflux carrier protein 4 [Glycine max]...   237   8e-61

>ref|XP_002324677.1| auxin efflux carrier component [Populus trichocarpa]
           gi|222866111|gb|EEF03242.1| auxin efflux carrier
           component [Populus trichocarpa]
          Length = 633

 Score =  251 bits (640), Expect = 7e-65
 Identities = 127/169 (75%), Positives = 142/169 (84%), Gaps = 1/169 (0%)
 Frame = +3

Query: 3   FRVESDVMSLNGREPLETNAEIGNDGKLHXXXXXXXXXXXXXXYNKSHGLNSITSMTPRA 182
           FRV+SDV+SLNGREPL+ +AEIG+DGKLH              +NKSHGLNSITSMTPRA
Sbjct: 175 FRVDSDVVSLNGREPLQADAEIGDDGKLHVVVKRSNASSIVSSFNKSHGLNSITSMTPRA 234

Query: 183 SNLTGVEIYSIQSSREPTPRASSFNQSDFYAMFSSKMPSPKHGYTNNNFQGGGADVYSLQ 362
           SNLTGVEIYS+QSSREPTPRASSFNQ+DFYAMF+SK  SPKHGYT N+FQGG  DVYSLQ
Sbjct: 235 SNLTGVEIYSVQSSREPTPRASSFNQTDFYAMFASKAASPKHGYT-NSFQGGIGDVYSLQ 293

Query: 363 SSKGVTPRTSNLEDEMMKLGKKKGGRSMSGELLN-GTLSSSYPPPNPMF 506
           SSKG TPRTSN ++EM+KLGKKKG  +MSGEL N G+L SSYPPPNPMF
Sbjct: 294 SSKGATPRTSNYDEEMLKLGKKKGRTNMSGELFNGGSLVSSYPPPNPMF 342


>ref|XP_002266059.1| PREDICTED: auxin efflux carrier component 2 isoform 1 [Vitis
           vinifera]
          Length = 630

 Score =  242 bits (617), Expect = 3e-62
 Identities = 126/169 (74%), Positives = 138/169 (81%), Gaps = 1/169 (0%)
 Frame = +3

Query: 3   FRVESDVMSLNGREPLETNAEIGNDGKLHXXXXXXXXXXXXXX-YNKSHGLNSITSMTPR 179
           FRVESDVMSLNGREPLET+AEIG+DGKLH               Y KSHGLNSI S+TPR
Sbjct: 175 FRVESDVMSLNGREPLETDAEIGDDGKLHVVVRRSSSSSVISSAYKKSHGLNSI-SITPR 233

Query: 180 ASNLTGVEIYSIQSSREPTPRASSFNQSDFYAMFSSKMPSPKHGYTNNNFQGGGADVYSL 359
           ASNLTGVEIYSIQSSREPTPRASSFNQ+DFYAMF+SK  SP+HG       GGGADV+SL
Sbjct: 234 ASNLTGVEIYSIQSSREPTPRASSFNQTDFYAMFASKTASPRHGSIGGVGAGGGADVFSL 293

Query: 360 QSSKGVTPRTSNLEDEMMKLGKKKGGRSMSGELLNGTLSSSYPPPNPMF 506
           QSSKG TPRTSN E+EM+K+GKK+GGRSMSGEL +G L SSYPPPNPMF
Sbjct: 294 QSSKGPTPRTSNFEEEMLKVGKKRGGRSMSGELFHGGLLSSYPPPNPMF 342


>ref|NP_001237559.1| auxin efflux carrier protein 3 [Glycine max]
           gi|222142549|gb|ACM45961.1| auxin efflux carrier protein
           3 [Glycine max]
          Length = 652

 Score =  239 bits (610), Expect = 2e-61
 Identities = 123/170 (72%), Positives = 138/170 (81%), Gaps = 2/170 (1%)
 Frame = +3

Query: 3   FRVESDVMSLNGREPLETNAEIGNDGKLHXXXXXXXXXXXXXXYNKSHGLNSITSMTPRA 182
           FRV+SDV+SLNGREPL+T+AEIG DGKLH              +NKSH    +TSMTPRA
Sbjct: 175 FRVDSDVVSLNGREPLQTDAEIGEDGKLHVVVKRSAASSMISSFNKSH----LTSMTPRA 230

Query: 183 SNLTGVEIYSIQSSREPTPRASSFNQSDFYAMFSSKMPSPKHGYTNN-NFQGGGADVYSL 359
           SNLTGVEIYS+QSSREPTPRASSFNQ+DFYAMF+SK PSPKHGYTN+    GG  DVYSL
Sbjct: 231 SNLTGVEIYSVQSSREPTPRASSFNQTDFYAMFASKAPSPKHGYTNSFQSNGGIGDVYSL 290

Query: 360 QSSKGVTPRTSNLEDEMMKLGKKKGGRSMSGELLNGTL-SSSYPPPNPMF 506
           QSSKG TPRTSN E+EM+K+ KK+GGRSMSGEL NG L SS+YPPPNPMF
Sbjct: 291 QSSKGATPRTSNFEEEMLKMHKKRGGRSMSGELFNGGLVSSNYPPPNPMF 340


>emb|CAN70111.1| hypothetical protein VITISV_032889 [Vitis vinifera]
          Length = 573

 Score =  239 bits (609), Expect = 3e-61
 Identities = 125/169 (73%), Positives = 137/169 (81%), Gaps = 1/169 (0%)
 Frame = +3

Query: 3   FRVESDVMSLNGREPLETNAEIGNDGKLHXXXXXXXXXXXXXX-YNKSHGLNSITSMTPR 179
           FRVESDVMSLNGREPLET+AEIG+DGKLH               Y KSHGLNSI S+TPR
Sbjct: 175 FRVESDVMSLNGREPLETDAEIGDDGKLHVVVRRSSSSSVISSAYKKSHGLNSI-SITPR 233

Query: 180 ASNLTGVEIYSIQSSREPTPRASSFNQSDFYAMFSSKMPSPKHGYTNNNFQGGGADVYSL 359
           ASNLTGVEIYSIQSSREPTPRASSFNQ+DFYAMF+SK  SP+HG       GGGADV+SL
Sbjct: 234 ASNLTGVEIYSIQSSREPTPRASSFNQTDFYAMFASKTASPRHGSIGGVGAGGGADVFSL 293

Query: 360 QSSKGVTPRTSNLEDEMMKLGKKKGGRSMSGELLNGTLSSSYPPPNPMF 506
           QSSKG TPRTSN E+EM+K+GKK+GGRSMSGEL +G L SSYP PNPMF
Sbjct: 294 QSSKGPTPRTSNFEEEMLKVGKKRGGRSMSGELFHGGLLSSYPTPNPMF 342


>ref|NP_001238365.1| auxin efflux carrier protein 4 [Glycine max]
           gi|222142551|gb|ACM45962.1| auxin efflux carrier protein
           4 [Glycine max]
          Length = 626

 Score =  237 bits (605), Expect = 8e-61
 Identities = 122/171 (71%), Positives = 138/171 (80%), Gaps = 3/171 (1%)
 Frame = +3

Query: 3   FRVESDVMSLNGREPLETNAEIGNDGKLHXXXXXXXXXXXXXXYNKSHGLNSITSMTPRA 182
           FRV+SDV+SLNGREPL+T+AEIG DGKLH              +NKSH    +TSMTPRA
Sbjct: 175 FRVDSDVVSLNGREPLQTDAEIGEDGKLHVVVKRSAASSMISSFNKSH----LTSMTPRA 230

Query: 183 SNLTGVEIYSIQSSREPTPRASSFNQSDFYAMFSSKMPSPKHGYTNN--NFQGGGADVYS 356
           SNLTGVEIYS+QSSREPTPR SSFNQ+DFYAMF+SK PSPKHGYTN+  +  GG  DVYS
Sbjct: 231 SNLTGVEIYSVQSSREPTPRGSSFNQTDFYAMFASKAPSPKHGYTNSFQSNNGGIGDVYS 290

Query: 357 LQSSKGVTPRTSNLEDEMMKLGKKKGGRSMSGELLNGTL-SSSYPPPNPMF 506
           LQSSKG TPRTSN E+EM+K+ KK+GGRSMSGEL NG L SS+YPPPNPMF
Sbjct: 291 LQSSKGATPRTSNFEEEMLKMHKKRGGRSMSGELFNGGLVSSNYPPPNPMF 341


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