BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025937
         (800 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containi...   223   3e-56
emb|CBI36131.3| unnamed protein product [Vitis vinifera]              223   3e-56
ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat...   219   5e-55
dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]    214   2e-53
ref|XP_003597735.1| Pentatricopeptide repeat-containing protein ...   212   9e-53

>ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  223 bits (569), Expect = 3e-56
 Identities = 104/134 (77%), Positives = 116/134 (86%)
 Frame = -1

Query: 800 ACSWIKVKNEVHVFLVEDMSHPQTEKIYAELERVEELMTDAGYVPDTTPVFHDVEEDEKK 621
           ACSWI+VKN+VH FL  D SHP +++IY+ELERV  LM +AGY P T  VFHDVE+DEK 
Sbjct: 515 ACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKA 574

Query: 620 TMVLGHSERLAIAFGLISTPPGTRLLVTKNLKICDDCHVAIKFISKITKREIIVRDVNRY 441
            MV  HSERLAIAFGLISTPPGTRLL+TKNL+IC+DCHVAIKFISKIT+REI VRDVNRY
Sbjct: 575 NMVCSHSERLAIAFGLISTPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRY 634

Query: 440 HHFKDGKCSCGDYW 399
           HHFKDG CSCGDYW
Sbjct: 635 HHFKDGVCSCGDYW 648


>emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  223 bits (569), Expect = 3e-56
 Identities = 104/134 (77%), Positives = 116/134 (86%)
 Frame = -1

Query: 800 ACSWIKVKNEVHVFLVEDMSHPQTEKIYAELERVEELMTDAGYVPDTTPVFHDVEEDEKK 621
           ACSWI+VKN+VH FL  D SHP +++IY+ELERV  LM +AGY P T  VFHDVE+DEK 
Sbjct: 417 ACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKA 476

Query: 620 TMVLGHSERLAIAFGLISTPPGTRLLVTKNLKICDDCHVAIKFISKITKREIIVRDVNRY 441
            MV  HSERLAIAFGLISTPPGTRLL+TKNL+IC+DCHVAIKFISKIT+REI VRDVNRY
Sbjct: 477 NMVCSHSERLAIAFGLISTPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRY 536

Query: 440 HHFKDGKCSCGDYW 399
           HHFKDG CSCGDYW
Sbjct: 537 HHFKDGVCSCGDYW 550


>ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  219 bits (558), Expect = 5e-55
 Identities = 103/134 (76%), Positives = 116/134 (86%)
 Frame = -1

Query: 800 ACSWIKVKNEVHVFLVEDMSHPQTEKIYAELERVEELMTDAGYVPDTTPVFHDVEEDEKK 621
           ACSWI+VKN+V+ FL  D+SHP +  IYAEL+R+E LM +AGYVPDT  VFHDVEEDEK 
Sbjct: 498 ACSWIEVKNKVYAFLSGDVSHPNSGAIYAELKRLEGLMREAGYVPDTGSVFHDVEEDEKT 557

Query: 620 TMVLGHSERLAIAFGLISTPPGTRLLVTKNLKICDDCHVAIKFISKITKREIIVRDVNRY 441
            MV  HSERLAIAFGLIST PGTRLL+TKNL+IC+DCHVAIKFISKIT+REI VRDVNRY
Sbjct: 558 DMVCSHSERLAIAFGLISTLPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRY 617

Query: 440 HHFKDGKCSCGDYW 399
           HHF+ G CSCGDYW
Sbjct: 618 HHFRHGLCSCGDYW 631


>dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  214 bits (545), Expect = 2e-53
 Identities = 95/134 (70%), Positives = 117/134 (87%)
 Frame = -1

Query: 800 ACSWIKVKNEVHVFLVEDMSHPQTEKIYAELERVEELMTDAGYVPDTTPVFHDVEEDEKK 621
           ACSWI++K + H FLV D SHP++++IY ELER+E LM+DAGYVPD  PVFH+V++DEK+
Sbjct: 504 ACSWIELKGKTHGFLVGDASHPRSDEIYGELERLEGLMSDAGYVPDIIPVFHNVDDDEKR 563

Query: 620 TMVLGHSERLAIAFGLISTPPGTRLLVTKNLKICDDCHVAIKFISKITKREIIVRDVNRY 441
            MV  HSERLAIAFGLISTPPGT+LLVTKNL++C+DCHV IK IS+I +REII+RDVNRY
Sbjct: 564 NMVRSHSERLAIAFGLISTPPGTKLLVTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRY 623

Query: 440 HHFKDGKCSCGDYW 399
           HHF +G+CSC DYW
Sbjct: 624 HHFVNGECSCKDYW 637


>ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|87240430|gb|ABD32288.1| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355486783|gb|AES67986.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  212 bits (539), Expect = 9e-53
 Identities = 99/134 (73%), Positives = 114/134 (85%)
 Frame = -1

Query: 800 ACSWIKVKNEVHVFLVEDMSHPQTEKIYAELERVEELMTDAGYVPDTTPVFHDVEEDEKK 621
           ACSWI+VKN+V+ FL  D+SH  ++ IYAEL+R+E LM +AGY PDT  VFHDVEEDEK 
Sbjct: 487 ACSWIEVKNKVYAFLAGDVSHSNSDAIYAELKRLEGLMHEAGYAPDTGSVFHDVEEDEKT 546

Query: 620 TMVLGHSERLAIAFGLISTPPGTRLLVTKNLKICDDCHVAIKFISKITKREIIVRDVNRY 441
           +MV  HSERLAIAFGLIST PGTRLL+TKNL+IC+DCHVAIKFISKI +REI VRDVNRY
Sbjct: 547 SMVCSHSERLAIAFGLISTSPGTRLLITKNLRICEDCHVAIKFISKIMEREITVRDVNRY 606

Query: 440 HHFKDGKCSCGDYW 399
           H FK G CSCGD+W
Sbjct: 607 HSFKHGMCSCGDHW 620