BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025912
         (514 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAW63130.1| 31 kDa putative protein [Strawberry latent ringsp...   167   6e-40
ref|NP_620833.1| 36 kDa protein [Strawberry latent ringspot viru...   119   2e-25

>gb|AAW63130.1| 31 kDa putative protein [Strawberry latent ringspot virus satellite
           RNA]
          Length = 287

 Score =  167 bits (424), Expect = 6e-40
 Identities = 89/162 (54%), Positives = 108/162 (66%), Gaps = 3/162 (1%)
 Frame = +2

Query: 14  KKGVVTLIETSRDFKLFED---LPEPVAIPGQTPQEAASLSREFAKRALVFSGRRLMPVG 184
           +KGVVTL+ET +DF LF D     + V  PGQT  EA +L REF KR L FSGRRL   G
Sbjct: 127 RKGVVTLVETEKDFALFGDEFTQNQVVPCPGQTLPEAEALQREFHKRTLAFSGRRLSVSG 186

Query: 185 LPEDHSTDPFASPLPRGPVPARRVVHVEPFTWDNMSYGQCSRTLALYKQLTSCFGSKMFQ 364
           LP    +DPFASP P  P    +V HV+P +W+ MS+GQCSR L LYKQL SCFG KMF 
Sbjct: 187 LPS--GSDPFASPSPVRPALTPKVAHVDPVSWEGMSFGQCSRALTLYKQLCSCFGVKMFS 244

Query: 365 ATLYKEAVKKVCKLTDAVPVSIPEFMGRLGQVDFGAAPAHVY 490
           ++LY  AV+KV +L +  PV+IPE   RLGQVD  A   H++
Sbjct: 245 SSLYGMAVRKVLRLREDFPVAIPENFARLGQVDRDARAVHLF 286


>ref|NP_620833.1| 36 kDa protein [Strawberry latent ringspot virus satellite RNA]
           gi|478364|pir||JQ2018 hypothetical 36.5K protein -
           strawberry latent ringspot virus
           gi|312511|emb|CAA49480.1| 36 kDa protein [Strawberry
           latent ringspot virus satellite RNA]
          Length = 331

 Score =  119 bits (299), Expect = 2e-25
 Identities = 69/136 (50%), Positives = 84/136 (61%), Gaps = 4/136 (2%)
 Frame = +2

Query: 11  AKKGVVTLIETSRDFKLFED---LPEPVAIPGQTPQEAASLSREFAKRALVFSGRRLMPV 181
           A+KGVVTL+ET +DF LF D     + V  PGQT  EA SL REF KRA  FSG+RL   
Sbjct: 126 ARKGVVTLVETEKDFALFCDEFTQNQVVPCPGQTLSEAESLQREFHKRAFAFSGKRLSVS 185

Query: 182 GLPEDHSTDPFASPLPR-GPVPARRVVHVEPFTWDNMSYGQCSRTLALYKQLTSCFGSKM 358
           GLPE     P  S L R       +  HV+P +W+ MS+GQCSR L LY+QL  CFG KM
Sbjct: 186 GLPEG----PIPSLLLRQSACNCPKGCHVDPVSWEGMSFGQCSRALTLYRQLCGCFGMKM 241

Query: 359 FQATLYKEAVKKVCKL 406
           F ++LY  AV++   L
Sbjct: 242 FSSSLYGMAVRRFSAL 257