BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025907
         (480 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containi...   233   1e-59
ref|XP_002326162.1| predicted protein [Populus trichocarpa] gi|2...   218   3e-55
ref|XP_002525196.1| pentatricopeptide repeat-containing protein,...   209   2e-52
ref|NP_195903.2| pentatricopeptide repeat-containing protein [Ar...   208   3e-52
dbj|BAC42187.2| unknown protein [Arabidopsis thaliana]                207   9e-52

>ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
           chloroplastic [Vitis vinifera]
           gi|297741486|emb|CBI32618.3| unnamed protein product
           [Vitis vinifera]
          Length = 842

 Score =  233 bits (594), Expect = 1e-59
 Identities = 111/147 (75%), Positives = 128/147 (87%)
 Frame = +1

Query: 1   AKTLMDEIKLAGLSPNQISWSIMIDICGRTGNIGGSIQALKAMRDNSIKPDVIAYTTAIK 180
           AK LMDE+K AGLSPN ISWSI+IDICG TGNI G+++ LK MR+  IKPDV+AYTTAIK
Sbjct: 518 AKALMDEMKTAGLSPNHISWSILIDICGGTGNIVGAVRILKTMREAGIKPDVVAYTTAIK 577

Query: 181 ACVENGSLKLAFSLFEEMKRYGVKPNLVTYNTLLRARSRYGSLHEVKQCLAIYQHMRKAG 360
            CVE+ +LK+AFSLF EMKRY ++PNLVTYNTLLRARSRYGSLHEV+QCLAIYQHMRKAG
Sbjct: 578 YCVESKNLKIAFSLFAEMKRYQIQPNLVTYNTLLRARSRYGSLHEVQQCLAIYQHMRKAG 637

Query: 361 YSPYDYFLKELVEEWCEGVITYNNQDE 441
           Y   DY+LKEL+EEWCEGVI  NN ++
Sbjct: 638 YKSNDYYLKELIEEWCEGVIQDNNLNQ 664


>ref|XP_002326162.1| predicted protein [Populus trichocarpa] gi|222833355|gb|EEE71832.1|
           predicted protein [Populus trichocarpa]
          Length = 828

 Score =  218 bits (556), Expect = 3e-55
 Identities = 104/148 (70%), Positives = 122/148 (82%)
 Frame = +1

Query: 1   AKTLMDEIKLAGLSPNQISWSIMIDICGRTGNIGGSIQALKAMRDNSIKPDVIAYTTAIK 180
           AK LMDE+K  G+SPN ISWSI+IDICG +GN+ G++Q LK MR   ++PDV+AYTTAIK
Sbjct: 529 AKALMDEMKTVGISPNHISWSILIDICGVSGNVSGAVQILKNMRMAGVEPDVVAYTTAIK 588

Query: 181 ACVENGSLKLAFSLFEEMKRYGVKPNLVTYNTLLRARSRYGSLHEVKQCLAIYQHMRKAG 360
            CVE  +LKLAFSLF EMKR  + PNLVTYNTLLRAR+RYGSL EV+QCLAIYQ MRKAG
Sbjct: 589 VCVETKNLKLAFSLFAEMKRCQINPNLVTYNTLLRARTRYGSLREVQQCLAIYQDMRKAG 648

Query: 361 YSPYDYFLKELVEEWCEGVITYNNQDEG 444
           Y   DY+LK+L+EEWCEGVI  NNQ +G
Sbjct: 649 YKSNDYYLKQLIEEWCEGVIQDNNQIQG 676


>ref|XP_002525196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535493|gb|EEF37162.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 786

 Score =  209 bits (531), Expect = 2e-52
 Identities = 103/145 (71%), Positives = 121/145 (83%)
 Frame = +1

Query: 1   AKTLMDEIKLAGLSPNQISWSIMIDICGRTGNIGGSIQALKAMRDNSIKPDVIAYTTAIK 180
           AK LMDE++  GLSPN ISWSI+IDICG +GN+ G+IQ LK MR   I+PDVIAYTTAIK
Sbjct: 465 AKALMDEMQAVGLSPNHISWSILIDICGSSGNMEGAIQILKNMRMAGIEPDVIAYTTAIK 524

Query: 181 ACVENGSLKLAFSLFEEMKRYGVKPNLVTYNTLLRARSRYGSLHEVKQCLAIYQHMRKAG 360
             VE+ +LK+AFSLF EMKRY +KPNLVTY+TLLRAR+RYGSL EV+QCLAIYQ MRKAG
Sbjct: 525 VSVESKNLKMAFSLFAEMKRYQLKPNLVTYDTLLRARTRYGSLKEVQQCLAIYQDMRKAG 584

Query: 361 YSPYDYFLKELVEEWCEGVITYNNQ 435
           Y   D +LK+L+EEWCEGVI  N+Q
Sbjct: 585 YKSNDNYLKQLIEEWCEGVIQDNDQ 609


>ref|NP_195903.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|332278227|sp|Q8GYL7.3|PP361_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g02830, chloroplastic; Flags: Precursor
           gi|332003140|gb|AED90523.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 852

 Score =  208 bits (530), Expect = 3e-52
 Identities = 97/146 (66%), Positives = 118/146 (80%)
 Frame = +1

Query: 4   KTLMDEIKLAGLSPNQISWSIMIDICGRTGNIGGSIQALKAMRDNSIKPDVIAYTTAIKA 183
           K LMDE+K  GLSPNQI+WS +ID+CG +G++ G+++ L+ M     +PDV+AYTTAIK 
Sbjct: 544 KELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTAIKI 603

Query: 184 CVENGSLKLAFSLFEEMKRYGVKPNLVTYNTLLRARSRYGSLHEVKQCLAIYQHMRKAGY 363
           C EN  LKLAFSLFEEM+RY +KPN VTYNTLL+ARS+YGSL EV+QCLAIYQ MR AGY
Sbjct: 604 CAENKCLKLAFSLFEEMRRYQIKPNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRNAGY 663

Query: 364 SPYDYFLKELVEEWCEGVITYNNQDE 441
            P D+FLKEL+EEWCEGVI  N Q +
Sbjct: 664 KPNDHFLKELIEEWCEGVIQENGQSQ 689


>dbj|BAC42187.2| unknown protein [Arabidopsis thaliana]
          Length = 852

 Score =  207 bits (526), Expect = 9e-52
 Identities = 96/146 (65%), Positives = 118/146 (80%)
 Frame = +1

Query: 4   KTLMDEIKLAGLSPNQISWSIMIDICGRTGNIGGSIQALKAMRDNSIKPDVIAYTTAIKA 183
           K LMDE+K  GLSPNQI+WS +ID+CG +G++ G+++ L+ M     +PDV+AYTTAIK 
Sbjct: 544 KELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTAIKI 603

Query: 184 CVENGSLKLAFSLFEEMKRYGVKPNLVTYNTLLRARSRYGSLHEVKQCLAIYQHMRKAGY 363
           C EN  LKLAFSLFEEM+RY +KPN VTYNTLL+ARS+YGSL EV+QCLAIYQ MR AGY
Sbjct: 604 CAENKCLKLAFSLFEEMRRYQIKPNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRNAGY 663

Query: 364 SPYDYFLKELVEEWCEGVITYNNQDE 441
            P D+FLKEL+EEWCEGVI  N + +
Sbjct: 664 KPNDHFLKELIEEWCEGVIQENGRSQ 689