BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025889
         (360 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containi...    72   5e-11
emb|CBI30729.3| unnamed protein product [Vitis vinifera]               72   5e-11
ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containi...    65   4e-09
ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containi...    65   6e-09
ref|XP_002867972.1| pentatricopeptide repeat-containing protein ...    65   6e-09

>ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
 Frame = +3

Query: 6   DIQQFHAHTIKIGQFHHN--TTRLVXXXXXXXXXXXXXXINDVYYTLSLLNHHQTTPCSF 179
           ++ Q HAH +K G  H     +RL+               + ++  +         P S+
Sbjct: 22  ELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIP-------NPNSY 74

Query: 180 LYNTLIRAFNQLHQPQQAFLLFYQMLHRCLFPDNFTVTFLIKSCARLSALEQGEQLH 350
           ++NT+IRA+     P+ A  +F+QMLH  + PD +T TF +KSC   S +E+G Q+H
Sbjct: 75  MWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIH 131


>emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
 Frame = +3

Query: 6   DIQQFHAHTIKIGQFHHN--TTRLVXXXXXXXXXXXXXXINDVYYTLSLLNHHQTTPCSF 179
           ++ Q HAH +K G  H     +RL+               + ++  +         P S+
Sbjct: 22  ELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIP-------NPNSY 74

Query: 180 LYNTLIRAFNQLHQPQQAFLLFYQMLHRCLFPDNFTVTFLIKSCARLSALEQGEQLH 350
           ++NT+IRA+     P+ A  +F+QMLH  + PD +T TF +KSC   S +E+G Q+H
Sbjct: 75  MWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIH 131


>ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 40/119 (33%), Positives = 62/119 (52%)
 Frame = +3

Query: 3   RDIQQFHAHTIKIGQFHHNTTRLVXXXXXXXXXXXXXXINDVYYTLSLLNHHQTTPCSFL 182
           R+++Q  A+TIK  Q  +N T L               ++  +     +      P   L
Sbjct: 49  RELKQIQAYTIKTHQ--NNPTVLTKLINFCTSNPTIASMDHAHRMFDKIPQ----PDIVL 102

Query: 183 YNTLIRAFNQLHQPQQAFLLFYQMLHRCLFPDNFTVTFLIKSCARLSALEQGEQLHCFA 359
           +NT+ R + +   P +A LL  Q+L   L PD++T + L+K+CARL ALE+G+QLHC A
Sbjct: 103 FNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACARLKALEEGKQLHCLA 161


>ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
           gi|449529868|ref|XP_004171920.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 37/116 (31%), Positives = 62/116 (53%)
 Frame = +3

Query: 3   RDIQQFHAHTIKIGQFHHNTTRLVXXXXXXXXXXXXXXINDVYYTLSLLNHHQTTPCSFL 182
           R  +Q HAH IK G   HNT   +                D+ Y +SL N  +  P  F+
Sbjct: 43  RTFKQIHAHIIKTGL--HNT---LFALSKLIEFSAVSRSGDISYAISLFNSIEE-PNLFI 96

Query: 183 YNTLIRAFNQLHQPQQAFLLFYQMLHRCLFPDNFTVTFLIKSCARLSALEQGEQLH 350
           +N++IR  +    P  A + F +M++  + P+++T  FL+KSCA+L++  +G+Q+H
Sbjct: 97  WNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIH 152


>ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297313808|gb|EFH44231.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 535

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
 Frame = +3

Query: 6   DIQQFHAHTIKIGQFHH--NTTRLVXXXXXXXXXXXXXXINDVYYTLSLLNHHQTTPCSF 179
           +IQQ HA  +K G FH   + ++LV                 V Y  S+LN  ++ P  F
Sbjct: 24  EIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEP------KTVSYAHSILNRIES-PNGF 76

Query: 180 LYNTLIRAFNQLHQPQQAFLLFYQMLHRCLFPDNFTVTFLIKSCARLSALEQGEQLH 350
            +N++IRA+     P+ A  +F +ML   +FPD ++ TF++K+CA     E+G Q+H
Sbjct: 77  THNSVIRAYANSSTPEIALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIH 133