BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025888
         (957 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor...   338   1e-90
emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]   338   1e-90
ref|XP_002301949.1| predicted protein [Populus trichocarpa] gi|2...   314   2e-83
ref|XP_003523282.1| PREDICTED: RNA pseudourine synthase 2, chlor...   313   5e-83
gb|AAF26765.1|AC007396_14 T4O12.25 [Arabidopsis thaliana]             311   1e-82

>ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
           vinifera] gi|302141717|emb|CBI18920.3| unnamed protein
           product [Vitis vinifera]
          Length = 433

 Score =  338 bits (867), Expect = 1e-90
 Identities = 169/227 (74%), Positives = 189/227 (83%), Gaps = 7/227 (3%)
 Frame = -3

Query: 934 DDRSSSMEIG-------SSIRPGIVHRLDKGTSGLLVVAKNEYSHAHLSEQFKQHTIHRV 776
           DD  +S   G       ++IRPGIVHRLDKGTSGLLVVAK+E+SHAHLSEQFK H+IHRV
Sbjct: 201 DDEFNSFAAGQNCGTCETNIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHSIHRV 260

Query: 775 YISLTSGVPTTLSGRVEVPIGRDINNRIRMAAIPCPSVSRQVRHAASRYKVIEVLAGGGS 596
           YISLTSGVPT LSGRVE+P+GRD NNRIRM A+P PS S Q RHAASRYKVIE+LA GGS
Sbjct: 261 YISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAVPGPSNSGQARHAASRYKVIEILAAGGS 320

Query: 595 ALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALSLLQPRISSSHRADLTKLVS 416
           ALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTK+MALSLL+PRI SSH   L +LVS
Sbjct: 321 ALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLRPRIPSSHHGQLAQLVS 380

Query: 415 MLERPCLHALALGFKHPHTGERIKFSCAPPADFVETLSLLRNMGSKK 275
            L+RPCLHA+ALGF HP TG+ + FSC PP DF E LS LR + ++K
Sbjct: 381 RLDRPCLHAVALGFNHPKTGKNVHFSCQPPEDFAEILSWLRKISTEK 427


>emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]
          Length = 611

 Score =  338 bits (867), Expect = 1e-90
 Identities = 169/227 (74%), Positives = 189/227 (83%), Gaps = 7/227 (3%)
 Frame = -3

Query: 934  DDRSSSMEIG-------SSIRPGIVHRLDKGTSGLLVVAKNEYSHAHLSEQFKQHTIHRV 776
            DD  +S   G       ++IRPGIVHRLDKGTSGLLVVAK+E+SHAHLSEQFK H+IHRV
Sbjct: 347  DDEFNSFAAGQNCGTCETNIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHSIHRV 406

Query: 775  YISLTSGVPTTLSGRVEVPIGRDINNRIRMAAIPCPSVSRQVRHAASRYKVIEVLAGGGS 596
            YISLTSGVPT LSGRVE+P+GRD NNRIRM A+P PS S Q RHAASRYKVIE+LA GGS
Sbjct: 407  YISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAVPGPSNSGQARHAASRYKVIEILAAGGS 466

Query: 595  ALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALSLLQPRISSSHRADLTKLVS 416
            ALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTK+MALSLL+PRI SSH   L +LVS
Sbjct: 467  ALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLRPRIPSSHHGQLAQLVS 526

Query: 415  MLERPCLHALALGFKHPHTGERIKFSCAPPADFVETLSLLRNMGSKK 275
             L+RPCLHA+ALGF HP TG+ + FSC PP DF E LS LR + ++K
Sbjct: 527  RLDRPCLHAVALGFNHPKTGKNVHFSCQPPEDFAEILSWLRKISTEK 573


>ref|XP_002301949.1| predicted protein [Populus trichocarpa] gi|222843675|gb|EEE81222.1|
           predicted protein [Populus trichocarpa]
          Length = 444

 Score =  314 bits (805), Expect = 2e-83
 Identities = 159/224 (70%), Positives = 183/224 (81%)
 Frame = -3

Query: 934 DDRSSSMEIGSSIRPGIVHRLDKGTSGLLVVAKNEYSHAHLSEQFKQHTIHRVYISLTSG 755
           D+   S    +S+RPGIVHRLDKGTSGLLVVAK+E+SHAHLSEQFK HTI RVY+SLT G
Sbjct: 221 DEGLCSSSYAASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIKRVYVSLTCG 280

Query: 754 VPTTLSGRVEVPIGRDINNRIRMAAIPCPSVSRQVRHAASRYKVIEVLAGGGSALVEWRL 575
           VP  ++GR++VPIGRD++NRIRMAAI  P+   Q RHAASRYKVIE+LAGGGSALVEWRL
Sbjct: 281 VPAPMAGRIDVPIGRDVSNRIRMAAIVEPNRG-QARHAASRYKVIEILAGGGSALVEWRL 339

Query: 574 ETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALSLLQPRISSSHRADLTKLVSMLERPCL 395
           ETGRTHQIRAHAKY+GIPLLGDEVYGGT++MALSLL+ R   S    L+  +S LERPCL
Sbjct: 340 ETGRTHQIRAHAKYIGIPLLGDEVYGGTQNMALSLLRSRTQPSCHRQLSLSLSGLERPCL 399

Query: 394 HALALGFKHPHTGERIKFSCAPPADFVETLSLLRNMGSKKTSLE 263
           HALALGF HP TG+ I FSC PP DF E LS LR MG++K S +
Sbjct: 400 HALALGFTHPCTGKEIHFSCPPPPDFTEILSQLREMGTEKLSFK 443


>ref|XP_003523282.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Glycine
           max]
          Length = 450

 Score =  313 bits (801), Expect = 5e-83
 Identities = 151/212 (71%), Positives = 179/212 (84%)
 Frame = -3

Query: 904 SSIRPGIVHRLDKGTSGLLVVAKNEYSHAHLSEQFKQHTIHRVYISLTSGVPTTLSGRVE 725
           +SIRPGIVHRLDKGTSGLLVVAK+E+SH  LSEQFKQ TI R+Y+SLT+GVPT ++GRVE
Sbjct: 232 NSIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKQRTIKRLYVSLTAGVPTPVAGRVE 291

Query: 724 VPIGRDINNRIRMAAIPCPSVSRQVRHAASRYKVIEVLAGGGSALVEWRLETGRTHQIRA 545
           VP+GRD NNRIRM A+  P  S++ R+AASRYKVIE+LAGG  +LVEW+LETGRTHQIRA
Sbjct: 292 VPVGRDTNNRIRMTAVTGPVNSKKARYAASRYKVIEILAGGSCSLVEWKLETGRTHQIRA 351

Query: 544 HAKYLGIPLLGDEVYGGTKSMALSLLQPRISSSHRADLTKLVSMLERPCLHALALGFKHP 365
           HAKYLG+PLLGDE+YGGTKSM LSLL+PR   S  + + K+VS L+RPCLHA  LGF+HP
Sbjct: 352 HAKYLGVPLLGDELYGGTKSMVLSLLRPRTPISLHSKIVKMVSRLDRPCLHAWTLGFQHP 411

Query: 364 HTGERIKFSCAPPADFVETLSLLRNMGSKKTS 269
           HTGE++ FSC PPADF E LS LR +GS+  S
Sbjct: 412 HTGEQVHFSCEPPADFAEILSQLRRIGSETVS 443


>gb|AAF26765.1|AC007396_14 T4O12.25 [Arabidopsis thaliana]
          Length = 980

 Score =  311 bits (797), Expect = 1e-82
 Identities = 150/222 (67%), Positives = 180/222 (81%)
 Frame = -3

Query: 949  FTGSHDDRSSSMEIGSSIRPGIVHRLDKGTSGLLVVAKNEYSHAHLSEQFKQHTIHRVYI 770
            F+   +  +S     +S+RPGIVHRLDKGT+GLLVVAK+E+SHAHL+EQFK HTI RVY+
Sbjct: 758  FSDDEEMTTSPSSYAASVRPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLHTIERVYV 817

Query: 769  SLTSGVPTTLSGRVEVPIGRDINNRIRMAAIPCPSVSRQVRHAASRYKVIEVLAGGGSAL 590
            SLT+GVP+   GR+E+PIGRD +NRIRMAAIP      + RHAASRYKVIE  AGGGSAL
Sbjct: 818  SLTTGVPSPPQGRIEIPIGRDSSNRIRMAAIPGGVRGGRARHAASRYKVIETFAGGGSAL 877

Query: 589  VEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALSLLQPRISSSHRADLTKLVSML 410
            VEWRLETGRTHQIRAHAKY+G+PLLGDEVYGGTKSMALSLLQ R+S S + ++ +L+S +
Sbjct: 878  VEWRLETGRTHQIRAHAKYMGVPLLGDEVYGGTKSMALSLLQKRVSRSDQEEIIELISRM 937

Query: 409  ERPCLHALALGFKHPHTGERIKFSCAPPADFVETLSLLRNMG 284
            +RPCLHA+ LGF HP TGE +KFSC PP+D  E + LLR  G
Sbjct: 938  DRPCLHAIVLGFTHPCTGEIVKFSCPPPSDLAEIVGLLRRSG 979