BLASTX nr result
ID: Coptis23_contig00025881
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00025881
(555 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002313727.1| predicted protein [Populus trichocarpa] gi|2... 131 1e-41
gb|ABK93461.1| unknown [Populus trichocarpa] 131 1e-41
ref|NP_001240148.1| uncharacterized protein LOC100810335 [Glycin... 119 8e-39
ref|XP_003523107.1| PREDICTED: tRNA-splicing endonuclease subuni... 119 1e-38
ref|NP_974966.1| tRNA-splicing endonuclease subunit Sen2-2 [Arab... 119 1e-37
>ref|XP_002313727.1| predicted protein [Populus trichocarpa] gi|222850135|gb|EEE87682.1|
predicted protein [Populus trichocarpa]
Length = 235
Score = 131 bits (329), Expect(2) = 1e-41
Identities = 65/108 (60%), Positives = 81/108 (75%), Gaps = 1/108 (0%)
Frame = +2
Query: 167 RKKNWVVKSGIQYVVDFVAHSHHPSLVHSEYAAVV-SEGNSSRNARLLAWPDLHATIRLE 343
R KNWV++ G+QY VDFVA+ HHPSLVHSEYA +V SEG++ R L W D H TIRL
Sbjct: 129 RMKNWVLRPGLQYGVDFVAYQHHPSLVHSEYAVIVLSEGDTGR---LRVWSDFHCTIRLC 185
Query: 344 GGVAKTLLVLHIEKNGCDTVSTSGLKHYTVEEQTVTRWSSEHCREDKK 487
G VAKTLL+L+++KNG +S S L+ Y+VEE T+TRWS E R+DKK
Sbjct: 186 GSVAKTLLILNVDKNGHGAISPSCLERYSVEECTITRWSPEQSRDDKK 233
Score = 64.3 bits (155), Expect(2) = 1e-41
Identities = 30/57 (52%), Positives = 41/57 (71%)
Frame = +1
Query: 1 YELSLEEPFCLCHSLKCLEIARKKYCFQNNEEVWELMKSKRDLFPISYKAYSHLRAK 171
++L LEE F LC+SLKCL+IA + +N+ ++W MK K++ FP YKAYSHLR K
Sbjct: 75 FQLGLEEAFYLCYSLKCLKIAGEDNFVKNDLDLWLYMKLKKEKFPDFYKAYSHLRMK 131
>gb|ABK93461.1| unknown [Populus trichocarpa]
Length = 235
Score = 131 bits (329), Expect(2) = 1e-41
Identities = 65/108 (60%), Positives = 81/108 (75%), Gaps = 1/108 (0%)
Frame = +2
Query: 167 RKKNWVVKSGIQYVVDFVAHSHHPSLVHSEYAAVV-SEGNSSRNARLLAWPDLHATIRLE 343
R KNWV++ G+QY VDFVA+ HHPSLVHSEYA +V SEG++ R L W D H TIRL
Sbjct: 129 RMKNWVLRPGLQYGVDFVAYQHHPSLVHSEYAVIVLSEGDTGR---LRVWSDFHCTIRLC 185
Query: 344 GGVAKTLLVLHIEKNGCDTVSTSGLKHYTVEEQTVTRWSSEHCREDKK 487
G VAKTLL+L+++KNG +S S L+ Y+VEE T+TRWS E R+DKK
Sbjct: 186 GSVAKTLLILNVDKNGHGAISPSCLERYSVEECTITRWSPEQSRDDKK 233
Score = 64.3 bits (155), Expect(2) = 1e-41
Identities = 30/57 (52%), Positives = 41/57 (71%)
Frame = +1
Query: 1 YELSLEEPFCLCHSLKCLEIARKKYCFQNNEEVWELMKSKRDLFPISYKAYSHLRAK 171
++L LEE F LC+SLKCL+IA + +N+ ++W MK K++ FP YKAYSHLR K
Sbjct: 75 FQLGLEEAFYLCYSLKCLKIAGEDNFVKNDLDLWLYMKLKKEKFPDFYKAYSHLRMK 131
>ref|NP_001240148.1| uncharacterized protein LOC100810335 [Glycine max]
gi|255634724|gb|ACU17724.1| unknown [Glycine max]
Length = 255
Score = 119 bits (297), Expect(2) = 8e-39
Identities = 58/106 (54%), Positives = 72/106 (67%), Gaps = 2/106 (1%)
Frame = +2
Query: 167 RKKNWVVKSGIQYVVDFVAHSHHPSLVHSEYAAVV-SEG-NSSRNARLLAWPDLHATIRL 340
R KNWVV+SG QY DFV + HHP+ VHSEY +V S+G + N RL W D+H T RL
Sbjct: 137 RMKNWVVRSGAQYGADFVVYCHHPARVHSEYGVLVLSDGEDKDLNGRLRVWSDVHCTTRL 196
Query: 341 EGGVAKTLLVLHIEKNGCDTVSTSGLKHYTVEEQTVTRWSSEHCRE 478
GGVAK LLVL++ +NG S L +YT+EE T+TRW+ E CRE
Sbjct: 197 LGGVAKILLVLYVNRNGSSNESPLCLANYTIEEHTITRWNPEQCRE 242
Score = 67.0 bits (162), Expect(2) = 8e-39
Identities = 33/59 (55%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Frame = +1
Query: 1 YELSLEEPFCLCHSLKCLEIARKK--YCFQNNEEVWELMKSKRDLFPISYKAYSHLRAK 171
++LS EE F LC+SLKCL+I QN+EE+W MKSK++ FP YKAYSHLR K
Sbjct: 81 FQLSFEEAFYLCYSLKCLKINNDSDDTSPQNSEELWHYMKSKKETFPCFYKAYSHLRMK 139
>ref|XP_003523107.1| PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like [Glycine
max]
Length = 255
Score = 119 bits (299), Expect(2) = 1e-38
Identities = 58/106 (54%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
Frame = +2
Query: 167 RKKNWVVKSGIQYVVDFVAHSHHPSLVHSEYAAVV--SEGNSSRNARLLAWPDLHATIRL 340
R KNWVV+SG QY DFV + HHP+ VHSEY +V E + N RL W D+H T RL
Sbjct: 137 RMKNWVVRSGAQYGADFVVYRHHPARVHSEYGVLVLSDEEDKDLNGRLRVWSDVHCTTRL 196
Query: 341 EGGVAKTLLVLHIEKNGCDTVSTSGLKHYTVEEQTVTRWSSEHCRE 478
GGVAK LLVL++ +NG S L +YTVEE+T+TRW+ E CRE
Sbjct: 197 LGGVAKILLVLYVNRNGGSNESPLCLANYTVEERTITRWNPEQCRE 242
Score = 65.5 bits (158), Expect(2) = 1e-38
Identities = 32/59 (54%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Frame = +1
Query: 1 YELSLEEPFCLCHSLKCLEIARKK--YCFQNNEEVWELMKSKRDLFPISYKAYSHLRAK 171
++LS EE F LC+SLKCL+I Q +EE+W MKSK++ FP YKAYSHLR K
Sbjct: 81 FQLSFEEAFYLCYSLKCLKINNDSDDTSSQTDEELWHYMKSKKETFPCFYKAYSHLRMK 139
>ref|NP_974966.1| tRNA-splicing endonuclease subunit Sen2-2 [Arabidopsis thaliana]
gi|332009914|gb|AED97297.1| tRNA-splicing endonuclease
subunit Sen2-2 [Arabidopsis thaliana]
Length = 255
Score = 119 bits (298), Expect(2) = 1e-37
Identities = 60/114 (52%), Positives = 79/114 (69%), Gaps = 2/114 (1%)
Frame = +2
Query: 167 RKKNWVVKSGIQYVVDFVAHSHHPSLVHSEYAAVVSEGNSSRNARLLAWPDLHATIRLEG 346
R KNWV++SG+QY VDFVA+ HHPSLVHSEY+ +V G+S RL W D+H +RL G
Sbjct: 134 RSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLVQSGDSD---RLRVWSDIHCAVRLSG 190
Query: 347 GVAKTLLVLHIEKN--GCDTVSTSGLKHYTVEEQTVTRWSSEHCREDKKLLNKR 502
VAKTLL L++ N G D L+++TVEEQT++RWS E RED+ +K+
Sbjct: 191 SVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSREDQSTNSKQ 244
Score = 62.4 bits (150), Expect(2) = 1e-37
Identities = 28/56 (50%), Positives = 40/56 (71%)
Frame = +1
Query: 4 ELSLEEPFCLCHSLKCLEIARKKYCFQNNEEVWELMKSKRDLFPISYKAYSHLRAK 171
+LS EE F L ++LKC++I+ + C +N + W MKSKR FP+ +KAYSHLR+K
Sbjct: 81 QLSFEEAFFLHYNLKCIKISLQGRCLENEVDTWLYMKSKRPNFPMFFKAYSHLRSK 136