BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025866
         (413 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]   178   5e-43
ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat...   176   2e-42
ref|XP_002530214.1| pentatricopeptide repeat-containing protein,...   169   2e-40
ref|XP_002330643.1| predicted protein [Populus trichocarpa] gi|2...   167   1e-39
ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat...   162   2e-38

>emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  178 bits (451), Expect = 5e-43
 Identities = 94/138 (68%), Positives = 110/138 (79%), Gaps = 1/138 (0%)
 Frame = -3

Query: 411  EYTFGSLVTVTYSSGS-GLCLLEQMLNQVMKYGFLSDLYVGSALVSGFARLGLLNTAKII 235
            EYTFGSL+T   SS   GLC+LEQML +V K GFL DLYVGSALVSGFAR GL + AK I
Sbjct: 753  EYTFGSLITAACSSVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNI 812

Query: 234  FREMGERNAVSMNGLMVGLVKQKRGVEAAEIFRETRDLVRVNYDSYVVLLSACAEFTLSE 55
            F +MG RN VSMNGLMVGLVKQK+G  AA++F E +DLV +N DSYVVLLSA +EF++ E
Sbjct: 813  FEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVVLLSAFSEFSVLE 872

Query: 54   EGRKKGREIHAFVVRNQL 1
            EGR+KGRE+HA V+R  L
Sbjct: 873  EGRRKGREVHAHVIRTGL 890



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 7/141 (4%)
 Frame = -3

Query: 405 TFGSLVTVTYSSGSGLCLLEQMLN---QVMKYGFLSDLYVGSALVSGFARLGLLNTAKII 235
           TF SL+    +   G C  E+      Q +KYGF+ +L++ + L++ + R+G L +A+ +
Sbjct: 546 TFESLI----NRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKL 601

Query: 234 FREMGERNAVSMNGLMVGLVKQKRGVEAAEIFRETRDLVRV----NYDSYVVLLSACAEF 67
           F EM  RN V+   L+ G  +  +  EA   F   RD+VR     N+ ++   L AC E 
Sbjct: 602 FDEMSNRNLVTWACLISGYTQNGKPDEACARF---RDMVRAGFIPNHYAFGSALRACQE- 657

Query: 66  TLSEEGRKKGREIHAFVVRNQ 4
                G K G +IH  + + +
Sbjct: 658 -SGPSGCKLGVQIHGLISKTR 677


>ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  176 bits (445), Expect = 2e-42
 Identities = 93/138 (67%), Positives = 109/138 (78%), Gaps = 1/138 (0%)
 Frame = -3

Query: 411 EYTFGSLVTVTYSSGS-GLCLLEQMLNQVMKYGFLSDLYVGSALVSGFARLGLLNTAKII 235
           EYTFGSL+T   SS   GLC+LEQML +V K GFL DLYV SALVSGFAR GL + AK I
Sbjct: 280 EYTFGSLITTACSSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNI 339

Query: 234 FREMGERNAVSMNGLMVGLVKQKRGVEAAEIFRETRDLVRVNYDSYVVLLSACAEFTLSE 55
           F +MG RN VSMNGLMVGLVKQK+G  AA++F E +DLV +N DSYVVLLSA +EF++ E
Sbjct: 340 FEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVVLLSAFSEFSVLE 399

Query: 54  EGRKKGREIHAFVVRNQL 1
           EGR+KGRE+HA V+R  L
Sbjct: 400 EGRRKGREVHAHVIRTGL 417



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 7/141 (4%)
 Frame = -3

Query: 405 TFGSLVTVTYSSGSGLCLLEQMLN---QVMKYGFLSDLYVGSALVSGFARLGLLNTAKII 235
           TF SL+    +   G C  E+      Q +KYGF+ +L++ + L++ + R+G L +A+ +
Sbjct: 73  TFESLI----NRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKL 128

Query: 234 FREMGERNAVSMNGLMVGLVKQKRGVEAAEIFRETRDLVRV----NYDSYVVLLSACAEF 67
           F EM  RN V+   L+ G  +  +  EA   F   RD+VR     N+ ++   L AC E 
Sbjct: 129 FDEMSNRNLVTWACLISGYTQNGKPDEACARF---RDMVRAGFIPNHYAFGSALRACQE- 184

Query: 66  TLSEEGRKKGREIHAFVVRNQ 4
                G K G +IH  + + +
Sbjct: 185 -SGPSGCKLGVQIHGLISKTR 204


>ref|XP_002530214.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530261|gb|EEF32161.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 834

 Score =  169 bits (428), Expect = 2e-40
 Identities = 90/138 (65%), Positives = 105/138 (76%), Gaps = 1/138 (0%)
 Frame = -3

Query: 411 EYTFGSLVTVTYSS-GSGLCLLEQMLNQVMKYGFLSDLYVGSALVSGFARLGLLNTAKII 235
           EYTFGSL+T   S+  SG  LLEQML  V K G LSD+YVGSALVSGF+R GL + AK I
Sbjct: 144 EYTFGSLITAAGSAVDSGSQLLEQMLTMVEKSGLLSDMYVGSALVSGFSRFGLFDYAKKI 203

Query: 234 FREMGERNAVSMNGLMVGLVKQKRGVEAAEIFRETRDLVRVNYDSYVVLLSACAEFTLSE 55
           F +MG RNAVSMN LMVGLV QK G EAAE+F E R++V +N DSYV+LLSA  +FTL E
Sbjct: 204 FEQMGMRNAVSMNSLMVGLVTQKCGEEAAEVFMEMRNIVNINLDSYVILLSAFTKFTLLE 263

Query: 54  EGRKKGREIHAFVVRNQL 1
           EGR+KGRE+H F +R  L
Sbjct: 264 EGRRKGREVHGFAIRTGL 281


>ref|XP_002330643.1| predicted protein [Populus trichocarpa] gi|222872247|gb|EEF09378.1|
           predicted protein [Populus trichocarpa]
          Length = 777

 Score =  167 bits (422), Expect = 1e-39
 Identities = 86/138 (62%), Positives = 106/138 (76%), Gaps = 1/138 (0%)
 Frame = -3

Query: 411 EYTFGSLVTVTYSS-GSGLCLLEQMLNQVMKYGFLSDLYVGSALVSGFARLGLLNTAKII 235
           EYTFGSL+T   SS  SGL LL Q+L ++ K G L++LYVGSAL  GF+RLG  + A+ I
Sbjct: 149 EYTFGSLITAACSSVDSGLSLLGQILARIKKSGLLANLYVGSALAGGFSRLGSFDYARKI 208

Query: 234 FREMGERNAVSMNGLMVGLVKQKRGVEAAEIFRETRDLVRVNYDSYVVLLSACAEFTLSE 55
           F +M  RNAVSMNGLMVGLV+QK G EA E+F+ETR LV +N DSYV+LLSACAEF L +
Sbjct: 209 FEQMTARNAVSMNGLMVGLVRQKCGEEAVEVFKETRHLVDINVDSYVILLSACAEFALLD 268

Query: 54  EGRKKGREIHAFVVRNQL 1
           EGR+KGRE+H + +R  L
Sbjct: 269 EGRRKGREVHGYAIRTGL 286


>ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Glycine max]
          Length = 1033

 Score =  162 bits (411), Expect = 2e-38
 Identities = 84/138 (60%), Positives = 109/138 (78%), Gaps = 1/138 (0%)
 Frame = -3

Query: 411 EYTFGSLVTVTYSS-GSGLCLLEQMLNQVMKYGFLSDLYVGSALVSGFARLGLLNTAKII 235
           EYTF SLVTV  S    GL LLEQML ++ K  F+ DLYVGSALVSGFAR GL+++AK+I
Sbjct: 248 EYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFARYGLIDSAKMI 307

Query: 234 FREMGERNAVSMNGLMVGLVKQKRGVEAAEIFRETRDLVRVNYDSYVVLLSACAEFTLSE 55
           F +M +RNAV+MNGLMVGL +Q +G EAA+IF+E +DLV +N  SY VLLSA  EF+  +
Sbjct: 308 FEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDLVEINASSYAVLLSAFTEFSNLK 367

Query: 54  EGRKKGREIHAFVVRNQL 1
           EG++KG+E+HA+++RN L
Sbjct: 368 EGKRKGQEVHAYLIRNAL 385