BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025781
         (572 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI17575.3| unnamed protein product [Vitis vinifera]              119   4e-25
ref|XP_002269078.1| PREDICTED: pentatricopeptide repeat-containi...   116   2e-24
ref|XP_003631109.1| Pentatricopeptide repeat-containing protein ...   109   4e-22
ref|XP_003524343.1| PREDICTED: pentatricopeptide repeat-containi...   107   1e-21
ref|XP_002327707.1| predicted protein [Populus trichocarpa] gi|2...   107   1e-21

>emb|CBI17575.3| unnamed protein product [Vitis vinifera]
          Length = 656

 Score =  119 bits (298), Expect = 4e-25
 Identities = 53/62 (85%), Positives = 59/62 (95%)
 Frame = -1

Query: 188 YMRNTIGMISNILRYSTWDSAQEQLDKLSIKWDSYTINQVLKTHPPMEKAWLFFNWASRL 9
           YMR+TIG IS ILRY TWDSAQEQL+KLSI+WDSYT+NQVLK+HPPMEKAWLFFNWASRL
Sbjct: 126 YMRDTIGNISKILRYLTWDSAQEQLEKLSIRWDSYTVNQVLKSHPPMEKAWLFFNWASRL 185

Query: 8   RG 3
           +G
Sbjct: 186 KG 187


>ref|XP_002269078.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01390-like [Vitis vinifera]
          Length = 519

 Score =  116 bits (291), Expect = 2e-24
 Identities = 52/61 (85%), Positives = 58/61 (95%)
 Frame = -1

Query: 185 MRNTIGMISNILRYSTWDSAQEQLDKLSIKWDSYTINQVLKTHPPMEKAWLFFNWASRLR 6
           MR+TIG IS ILRY TWDSAQEQL+KLSI+WDSYT+NQVLK+HPPMEKAWLFFNWASRL+
Sbjct: 1   MRDTIGNISKILRYLTWDSAQEQLEKLSIRWDSYTVNQVLKSHPPMEKAWLFFNWASRLK 60

Query: 5   G 3
           G
Sbjct: 61  G 61


>ref|XP_003631109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355525131|gb|AET05585.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 687

 Score =  109 bits (272), Expect = 4e-22
 Identities = 47/62 (75%), Positives = 54/62 (87%)
 Frame = -1

Query: 188 YMRNTIGMISNILRYSTWDSAQEQLDKLSIKWDSYTINQVLKTHPPMEKAWLFFNWASRL 9
           YMRN IG I   L+YS+WDSAQ+QL  L +KWDSYT+NQVLK+HPPMEKAWLFFNWASRL
Sbjct: 167 YMRNVIGNIYRTLKYSSWDSAQQQLQNLPLKWDSYTVNQVLKSHPPMEKAWLFFNWASRL 226

Query: 8   RG 3
           +G
Sbjct: 227 KG 228


>ref|XP_003524343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01390-like [Glycine max]
          Length = 585

 Score =  107 bits (267), Expect = 1e-21
 Identities = 45/62 (72%), Positives = 55/62 (88%)
 Frame = -1

Query: 188 YMRNTIGMISNILRYSTWDSAQEQLDKLSIKWDSYTINQVLKTHPPMEKAWLFFNWASRL 9
           YMRN IG I N+L+YS+W+SA++ L+ LS+KWDSYT+NQVLK+HPPMEKAWLFFNW S L
Sbjct: 64  YMRNVIGKIYNMLKYSSWESAEQDLNNLSMKWDSYTVNQVLKSHPPMEKAWLFFNWVSSL 123

Query: 8   RG 3
           RG
Sbjct: 124 RG 125


>ref|XP_002327707.1| predicted protein [Populus trichocarpa] gi|222836792|gb|EEE75185.1|
           predicted protein [Populus trichocarpa]
          Length = 225

 Score =  107 bits (267), Expect = 1e-21
 Identities = 46/61 (75%), Positives = 55/61 (90%)
 Frame = -1

Query: 188 YMRNTIGMISNILRYSTWDSAQEQLDKLSIKWDSYTINQVLKTHPPMEKAWLFFNWASRL 9
           YMR+ I  I  IL+YSTWDSAQE+L KL+IKWDS+T+NQ+LKTHPPMEKAWLFFNWAS+L
Sbjct: 39  YMRDIISNIYKILKYSTWDSAQEELTKLNIKWDSFTVNQILKTHPPMEKAWLFFNWASKL 98

Query: 8   R 6
           +
Sbjct: 99  K 99