BLASTX nr result

ID: Coptis23_contig00025779 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025779
         (898 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002322740.1| predicted protein [Populus trichocarpa] gi|2...   252   9e-65
emb|CAN68511.1| hypothetical protein VITISV_043839 [Vitis vinifera]   251   2e-64
ref|XP_003632719.1| PREDICTED: uncharacterized protein LOC100267...   249   5e-64
ref|XP_002531176.1| nucleic acid binding protein, putative [Rici...   247   3e-63
ref|XP_004163935.1| PREDICTED: uncharacterized LOC101222540 [Cuc...   199   6e-49

>ref|XP_002322740.1| predicted protein [Populus trichocarpa] gi|222867370|gb|EEF04501.1|
           predicted protein [Populus trichocarpa]
          Length = 233

 Score =  252 bits (643), Expect = 9e-65
 Identities = 135/247 (54%), Positives = 171/247 (69%), Gaps = 3/247 (1%)
 Frame = +3

Query: 90  MEKNERETHDFMNVDSFSQLPFKRPAAPVKEKGIRLFGIEFMG--EAPVTEESDSCATKV 263
           M+K ERETHDFMNV+SFSQLPF RPA P+KEKGIRLFGIEF    E+P  +ESDS  T  
Sbjct: 1   MDKVERETHDFMNVESFSQLPFIRPA-PIKEKGIRLFGIEFGSNKESPAADESDSAETNE 59

Query: 264 FEDSKENENAESVRKFECHYCCRTFPTSQALGGHQNAHKRERQHAKRAHLQSTLAHNSIH 443
            + +KENE++++ R+FECHYCCR FPTSQALGGHQNAHKRERQHAKRAHLQS + HNS+ 
Sbjct: 60  -DAAKENESSDNNRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAHLQSAMIHNSLS 118

Query: 444 DGHMYGLVNYRIGAATPTLSSYPSWXXXXXXXXXXXXXHHQFYRNQGALSQTPINGSPLS 623
           D H YG++NYRI + +    ++PSW              +++Y  QG+ SQ PINGSPL 
Sbjct: 119 DAHYYGILNYRIDSISTAAMTHPSWNSHTST--------NRYYGGQGSYSQQPINGSPLG 170

Query: 624 MWRMSQVQTSHGYSH-DRMLLPLSPSSSFIAGDHSRLAPIDSSNPHSRRVHEAKTNLHDP 800
           +WR+  V  S    H DR + PL PS S   G+  + +P   S+ H R  +E+K+++ D 
Sbjct: 171 LWRIPAVHGSATLQHPDRSVHPL-PSFS---GEGLKPSPAGGSSSHGRYGYESKSSVQDR 226

Query: 801 VSLDLRL 821
           VSLDL L
Sbjct: 227 VSLDLHL 233


>emb|CAN68511.1| hypothetical protein VITISV_043839 [Vitis vinifera]
          Length = 270

 Score =  251 bits (641), Expect = 2e-64
 Identities = 138/252 (54%), Positives = 168/252 (66%), Gaps = 3/252 (1%)
 Frame = +3

Query: 75  PFLPSMEK-NERETHDFMNVDSFSQLPFKRPAAPVKEKGIRLFGIEFMGEAPVTEESDSC 251
           P L  M+K  ERETHDFMNV+SFSQLPF RPA PVKEKGIRLFG EF G     E+S+S 
Sbjct: 28  PSLLLMDKATERETHDFMNVESFSQLPFIRPA-PVKEKGIRLFGKEFGGHHDPEEQSESV 86

Query: 252 ATKVFEDSKENENAESVRKFECHYCCRTFPTSQALGGHQNAHKRERQHAKRAHLQSTLAH 431
            T + ED K++EN ES R+FECHYCCR FPTSQALGGHQNAHKRERQHAKRAHLQS + H
Sbjct: 87  ETNMCEDVKDSENGESGRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAHLQSAMVH 146

Query: 432 NSIHDGHMYGLVNYRIGAATPTLSSYPSWXXXXXXXXXXXXXHHQFYRNQGALSQTPING 611
           + + D HMYGLVNYR+G+A     +YPSW             + +FY + G+ SQ PING
Sbjct: 147 SGLSDAHMYGLVNYRLGSAPTPPITYPSW------GSQAISSNGRFYGSHGSFSQPPING 200

Query: 612 SPLSMWRM-SQVQTSHGYSHDRMLLPLSPSSSFIAGDHSRLAPIDSSNPHSRRVHEA-KT 785
           +PL++WR+ + VQT+  +S DR      P   F   D    + +  S   SR V+E+ K 
Sbjct: 201 NPLALWRIPASVQTTPTFSRDRS--SHHPLPLFAGDDLKPSSHVGGSTSQSRYVYESTKP 258

Query: 786 NLHDPVSLDLRL 821
            + D VSLDL L
Sbjct: 259 GVQDHVSLDLHL 270


>ref|XP_003632719.1| PREDICTED: uncharacterized protein LOC100267595 [Vitis vinifera]
          Length = 238

 Score =  249 bits (637), Expect = 5e-64
 Identities = 134/242 (55%), Positives = 163/242 (67%), Gaps = 2/242 (0%)
 Frame = +3

Query: 102 ERETHDFMNVDSFSQLPFKRPAAPVKEKGIRLFGIEFMGEAPVTEESDSCATKVFEDSKE 281
           ERETHDFMNV+SFSQLPF RPA PVKEKGIRLFG EF G     E+S+S  T + ED K+
Sbjct: 6   ERETHDFMNVESFSQLPFIRPA-PVKEKGIRLFGKEFGGHHDPEEQSESVETNMCEDVKD 64

Query: 282 NENAESVRKFECHYCCRTFPTSQALGGHQNAHKRERQHAKRAHLQSTLAHNSIHDGHMYG 461
           +EN ES R+FECHYCCR FPTSQALGGHQNAHKRERQHAKRAHLQS + H+ + D HMYG
Sbjct: 65  SENGESGRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAHLQSAMVHSGLSDAHMYG 124

Query: 462 LVNYRIGAATPTLSSYPSWXXXXXXXXXXXXXHHQFYRNQGALSQTPINGSPLSMWRM-S 638
           LVNYR+G+A     +YPSW             + +FY + G+ SQ PING+PL++WR+ +
Sbjct: 125 LVNYRLGSAPTPPITYPSW------GSQAISSNGRFYGSHGSFSQPPINGNPLALWRIPA 178

Query: 639 QVQTSHGYSHDRMLLPLSPSSSFIAGDHSRLAPIDSSNPHSRRVHEA-KTNLHDPVSLDL 815
            VQT+  +S DR      P   F   D    + +  S   SR V+E+ K  + D VSLDL
Sbjct: 179 SVQTTPTFSRDRS--SHHPLPLFAGDDLKPSSHVGGSTSQSRYVYESTKPGVQDHVSLDL 236

Query: 816 RL 821
            L
Sbjct: 237 HL 238


>ref|XP_002531176.1| nucleic acid binding protein, putative [Ricinus communis]
           gi|223529246|gb|EEF31219.1| nucleic acid binding
           protein, putative [Ricinus communis]
          Length = 231

 Score =  247 bits (630), Expect = 3e-63
 Identities = 126/244 (51%), Positives = 160/244 (65%)
 Frame = +3

Query: 90  MEKNERETHDFMNVDSFSQLPFKRPAAPVKEKGIRLFGIEFMGEAPVTEESDSCATKVFE 269
           M+K+ERETHDFMNV+SFSQLPF RPA PVKEK IRLFGIEF G      +  + A    +
Sbjct: 1   MDKSERETHDFMNVESFSQLPFIRPA-PVKEKSIRLFGIEFGGNDSAAGDDSASAETNED 59

Query: 270 DSKENENAESVRKFECHYCCRTFPTSQALGGHQNAHKRERQHAKRAHLQSTLAHNSIHDG 449
           ++KE+E+ ++ R+FECHYCCR FPTSQALGGHQNAHKRERQHAKRAHLQS + HNS  D 
Sbjct: 60  NTKESESGDNNRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAHLQSAMVHNSFSDA 119

Query: 450 HMYGLVNYRIGAATPTLSSYPSWXXXXXXXXXXXXXHHQFYRNQGALSQTPINGSPLSMW 629
           H+YG++NYRIG+      SYPSW               +FY + G+  Q PINGSPL +W
Sbjct: 120 HIYGMMNYRIGSNPTPAMSYPSW--------NSHANSSRFYGSHGSYPQQPINGSPLGLW 171

Query: 630 RMSQVQTSHGYSHDRMLLPLSPSSSFIAGDHSRLAPIDSSNPHSRRVHEAKTNLHDPVSL 809
           R+  V +S     DR + PL       +G+  +L+ +  S+   R  +E K ++ D VSL
Sbjct: 172 RIPTVHSSATLHRDRSMNPL----PLFSGEELKLSQVGGSSSQGRYGYEGKPSVQDHVSL 227

Query: 810 DLRL 821
           DL L
Sbjct: 228 DLHL 231


>ref|XP_004163935.1| PREDICTED: uncharacterized LOC101222540 [Cucumis sativus]
          Length = 277

 Score =  199 bits (507), Expect = 6e-49
 Identities = 137/279 (49%), Positives = 160/279 (57%), Gaps = 38/279 (13%)
 Frame = +3

Query: 99  NERETHDFMNVDSFSQLPFKRPAAPVKEKGIRLFGIEFMGEAPVT------EESDSCATK 260
           +ERETHDFMNV+SFSQLPF RPA   KEKGIRLFGIEF      T      EES+S  T 
Sbjct: 6   SERETHDFMNVESFSQLPFIRPAP--KEKGIRLFGIEFGSRNAATVSASSIEESESGETI 63

Query: 261 VF-EDSKENEN-----AESVRKFECHYCCRTFPTSQALGGHQNAHKRERQHAKRAHLQST 422
           +  ED+KEN N      ES R+FECHYCCR FPTSQALGGHQNAHKRERQHAKRAHLQS 
Sbjct: 64  IACEDAKENNNDNNNGGESSRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAHLQSN 123

Query: 423 LAHNSIHD-------GHMYGLVNY-RIGAATPTLSSYPSWXXXXXXXXXXXXXHHQFYRN 578
            A   +H         H+YGL+NY R+GA    +++YPSW               +FY +
Sbjct: 124 AA-AMVHGIGPFSDAAHVYGLMNYQRLGAT--HINNYPSWNRNSPAATAAAAAATRFYGS 180

Query: 579 QG-----ALSQTPINGSPLSMWRMSQVQTSHGYSH--DRMLLPLSPSSSFIAGDHSRLA- 734
            G     A + TPINGSPL+MWR+S VQ S+  S    R    + P   F   D  + A 
Sbjct: 181 SGGQYSSAATATPINGSPLAMWRISAVQNSNLPSSFGGRERSSIHPLPLFSGDDMMKGAG 240

Query: 735 ----------PIDSSNPHSRRVHEAKTNLHDPVSLDLRL 821
                         S+   R V+EAKT   D VSLDL L
Sbjct: 241 GGGGTAVSGGGSGGSHQTGRFVYEAKT--ADQVSLDLHL 277


Top