BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025776
         (536 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]            83   3e-14
ref|XP_001770548.1| predicted protein [Physcomitrella patens sub...    81   1e-13
ref|XP_001761820.1| predicted protein [Physcomitrella patens sub...    77   2e-12
ref|XP_002300896.1| predicted protein [Populus trichocarpa] gi|2...    77   2e-12
gb|AFP74112.1| poly-A binding protein, partial [Nicotiana bentha...    76   3e-12

>dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
          Length = 657

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 60/177 (33%), Positives = 90/177 (50%), Gaps = 5/177 (2%)
 Frame = +3

Query: 21  ATKAIEKLHCKSINGKAIGVKFSNGIWTK----DANVFVNNLLWRKSEKNVLKLFSHYGS 188
           A++A+E L+   +NGK+I V +S+   T      AN+F+ NL      K +   FS +G+
Sbjct: 92  ASRAMEMLNFTPVNGKSIRVMYSHRDPTLRKSGSANIFIKNLDKSIDNKALHDTFSSFGN 151

Query: 189 FLSCKVSIDTV-RKKNYXXXXXXXXXXXXXXIRRMNWMGWSDLVIYVGPFRYKQEREAAT 365
            LSCK++ D+  + K Y              I ++N M  +D  +YVG F  KQERE+ T
Sbjct: 152 ILSCKIATDSNGQSKGYGFVQYDNEESAQGAIDKLNGMLMNDKQVYVGHFLRKQERESTT 211

Query: 366 RLEYRCTVYAGNLSDKINDIEMWQEFEDHEDIGDINCAGVEWDDCRNSKLFGFLIFK 536
            +     VY  NLS+   D E+ + F    + G+I  A V  D    SK FGF+ F+
Sbjct: 212 GMTKFQNVYVKNLSESTTDDELKKVF---GEFGNITSAVVMRDADGKSKCFGFINFE 265


>ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
           gi|162678256|gb|EDQ64717.1| predicted protein
           [Physcomitrella patens subsp. patens]
          Length = 645

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 58/177 (32%), Positives = 92/177 (51%), Gaps = 5/177 (2%)
 Frame = +3

Query: 21  ATKAIEKLHCKSINGKAIGVKFSNGI----WTKDANVFVNNLLWRKSEKNVLKLFSHYGS 188
           AT+A+E L+  ++NGK I + FS+       +  AN+F+ NL      K +   F+ +G+
Sbjct: 78  ATRALELLNFNAVNGKPIRIMFSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFAAFGT 137

Query: 189 FLSCKVSID-TVRKKNYXXXXXXXXXXXXXXIRRMNWMGWSDLVIYVGPFRYKQEREAAT 365
            LSCKV+ D + + K Y              I ++N M  +D  ++VGPF  +QER+ + 
Sbjct: 138 ILSCKVATDPSGQSKGYGFVQFEQEESAQTAIEKVNGMLLNDKQVFVGPFVRRQERDQSG 197

Query: 366 RLEYRCTVYAGNLSDKINDIEMWQEFEDHEDIGDINCAGVEWDDCRNSKLFGFLIFK 536
            +     VY  NL+D   D E+ + FE +   G I+ A V  D+   SK FGF+ F+
Sbjct: 198 VVSKFNNVYVKNLADSTTDDELKKVFEAY---GPISSAVVMRDNEGKSKCFGFVNFE 251


>ref|XP_001761820.1| predicted protein [Physcomitrella patens subsp. patens]
           gi|162686875|gb|EDQ73261.1| predicted protein
           [Physcomitrella patens subsp. patens]
          Length = 439

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 5/177 (2%)
 Frame = +3

Query: 21  ATKAIEKLHCKSINGKAIGVKFSNGI----WTKDANVFVNNLLWRKSEKNVLKLFSHYGS 188
           AT+A+E L+   +NGK I + FS+       +  AN+F+ NL      K +   F+ +G+
Sbjct: 78  ATRALELLNFTGVNGKPIRIMFSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFAAFGN 137

Query: 189 FLSCKVSIDTV-RKKNYXXXXXXXXXXXXXXIRRMNWMGWSDLVIYVGPFRYKQEREAAT 365
            LSCKV+ D   + K Y              I ++N M  +D  ++VGPF  +QER+ A 
Sbjct: 138 ILSCKVATDASGQSKGYGFVQFEQEESAQNAIEKVNGMLLNDKQVFVGPFVRRQERDQAG 197

Query: 366 RLEYRCTVYAGNLSDKINDIEMWQEFEDHEDIGDINCAGVEWDDCRNSKLFGFLIFK 536
            +     VY  NL+D   D E+ + F      G I+ A V  D+   SK FGF+ F+
Sbjct: 198 GVSKFNNVYVKNLADVTTDDELKKVFGAW---GPISSAVVMRDNDGKSKCFGFVNFE 251


>ref|XP_002300896.1| predicted protein [Populus trichocarpa] gi|222842622|gb|EEE80169.1|
           predicted protein [Populus trichocarpa]
          Length = 648

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 5/177 (2%)
 Frame = +3

Query: 21  ATKAIEKLHCKSINGKAIGVKFSNGIWTK----DANVFVNNLLWRKSEKNVLKLFSHYGS 188
           A KA+E L+   +NGK I + FS+   T      ANVF+ NL  +   K + + F+ +G 
Sbjct: 87  AAKAMEVLNFTPLNGKPIRIMFSHRDPTTRRSGHANVFIKNLDTKIDNKALYETFASFGP 146

Query: 189 FLSCKVSID-TVRKKNYXXXXXXXXXXXXXXIRRMNWMGWSDLVIYVGPFRYKQEREAAT 365
            LSCKV++D   + K Y              I R+N M  +D  +YVGPF  + ER  A 
Sbjct: 147 VLSCKVAVDNNGQSKGYGFIQFENEEDAQSAINRLNGMLVNDREVYVGPFVRRLERIEAN 206

Query: 366 RLEYRCTVYAGNLSDKINDIEMWQEFEDHEDIGDINCAGVEWDDCRNSKLFGFLIFK 536
                  VY  NLS+  +D ++ + F  +   G I  A V  D    S+ FGF+ F+
Sbjct: 207 GSPKFTNVYVKNLSETTSDEDLKKIFSSY---GAITSAIVMKDQNGKSRGFGFVNFQ 260


>gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
          Length = 643

 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 55/177 (31%), Positives = 87/177 (49%), Gaps = 5/177 (2%)
 Frame = +3

Query: 21  ATKAIEKLHCKSINGKAIGVKFSNGIWT----KDANVFVNNLLWRKSEKNVLKLFSHYGS 188
           A +A+E L+   ++GK I + +SN   T     + N+F+ NL      K +   FS +G+
Sbjct: 81  AARALEVLNFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFGN 140

Query: 189 FLSCKVSIDTV-RKKNYXXXXXXXXXXXXXXIRRMNWMGWSDLVIYVGPFRYKQEREAAT 365
            LSCKV++D+  + K Y              I ++N M  +D  +YVGPF  KQER+ A 
Sbjct: 141 ILSCKVAVDSSGQSKGYGFVQYDSDEAAQKAIEKLNGMLLNDKQVYVGPFVRKQERDMAV 200

Query: 366 RLEYRCTVYAGNLSDKINDIEMWQEFEDHEDIGDINCAGVEWDDCRNSKLFGFLIFK 536
                  V+  NLS+   + E+ + F    + G I    V  D+   S+ FGF+ F+
Sbjct: 201 DKTRFTNVFVKNLSESTLEEELRKIF---GEFGTITSVAVMKDEDGKSRCFGFVNFE 254