BLASTX nr result
ID: Coptis23_contig00025715
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00025715
(531 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containi... 254 6e-66
emb|CBI31859.3| unnamed protein product [Vitis vinifera] 254 6e-66
ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containi... 252 3e-65
ref|XP_003623891.1| Pentatricopeptide repeat-containing protein ... 251 5e-65
ref|XP_002510857.1| pentatricopeptide repeat-containing protein,... 248 4e-64
>ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 254 bits (649), Expect = 6e-66
Identities = 117/176 (66%), Positives = 147/176 (83%)
Frame = -2
Query: 530 ITVSNVLSACAHLGALDTGKAVHNYIHAHTIKADLHVGNALIDMYFKCGCIKKALGVFEE 351
+TV++VLSACAHLG LD G AVH+YI H ++AD++VGN+LIDMY KCG ++KAL VF
Sbjct: 350 VTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHR 409
Query: 350 MAEKDSVSWTSIITGLAVNGYAKEALRIFSHMLKEGVQPRDVTFVGVLVACTHAGLVDEG 171
M +KDSVSWTS+I+GLAVNG+A AL +FS ML+EGVQP TFVG+L+AC HAGLV++G
Sbjct: 410 MKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKG 469
Query: 170 VQYFESMKKVHRIEPRMKHYGCIVDLLSRSGFLDRAYEFITSIPITPDAIVWRILL 3
++YFESM+ VH + P MKHYGC+VDLLSRSG +D+AYEFI +PI PD +VWRILL
Sbjct: 470 LEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILL 525
Score = 86.7 bits (213), Expect = 2e-15
Identities = 52/203 (25%), Positives = 96/203 (47%), Gaps = 31/203 (15%)
Frame = -2
Query: 530 ITVSNVLSACAHLGALDTGKAVHNYIHAHTIKADLHVGNALIDMYFKCGCIKKALGVFEE 351
+T+ ++ AC+HLG + ++ YI + ++ D+++GN LIDMY + + A GVF+
Sbjct: 218 VTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDR 277
Query: 350 MAE-------------------------------KDSVSWTSIITGLAVNGYAKEALRIF 264
M E +D +SWTS+ITG + +A+++F
Sbjct: 278 MRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLF 337
Query: 263 SHMLKEGVQPRDVTFVGVLVACTHAGLVDEGVQYFESMKKVHRIEPRMKHYGCIVDLLSR 84
M+ V+P VT VL AC H G +D G +++ H ++ + ++D+ +
Sbjct: 338 QEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRR-HGVQADIYVGNSLIDMYCK 396
Query: 83 SGFLDRAYEFITSIPITPDAIVW 15
G +++A E + D++ W
Sbjct: 397 CGMVEKALEVFHRMK-DKDSVSW 418
Score = 75.1 bits (183), Expect = 6e-12
Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 3/159 (1%)
Frame = -2
Query: 530 ITVSNVLSACAHLGALDTGKAVHNYIHAHTIKADLHVGNALIDMYFKCGCIKKALGVFEE 351
+T+ + ACA + + +G+ +H + ++ L V NALI MY CG + A +F+
Sbjct: 117 LTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDG 176
Query: 350 MAEKDSVSWTSIITGLAVNGYAKEALRIFSHMLKEGVQPRDVTFVGVLVACTHAG---LV 180
M ++D VSW ++I G + KE LR+F M ++ VT V +++AC+H G
Sbjct: 177 MLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFA 236
Query: 179 DEGVQYFESMKKVHRIEPRMKHYGCIVDLLSRSGFLDRA 63
D V+Y K + +E + ++D+ R + A
Sbjct: 237 DSMVKYI----KENNLEIDVYLGNTLIDMYGRRSLAELA 271
>emb|CBI31859.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 254 bits (649), Expect = 6e-66
Identities = 117/176 (66%), Positives = 147/176 (83%)
Frame = -2
Query: 530 ITVSNVLSACAHLGALDTGKAVHNYIHAHTIKADLHVGNALIDMYFKCGCIKKALGVFEE 351
+TV++VLSACAHLG LD G AVH+YI H ++AD++VGN+LIDMY KCG ++KAL VF
Sbjct: 227 VTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHR 286
Query: 350 MAEKDSVSWTSIITGLAVNGYAKEALRIFSHMLKEGVQPRDVTFVGVLVACTHAGLVDEG 171
M +KDSVSWTS+I+GLAVNG+A AL +FS ML+EGVQP TFVG+L+AC HAGLV++G
Sbjct: 287 MKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKG 346
Query: 170 VQYFESMKKVHRIEPRMKHYGCIVDLLSRSGFLDRAYEFITSIPITPDAIVWRILL 3
++YFESM+ VH + P MKHYGC+VDLLSRSG +D+AYEFI +PI PD +VWRILL
Sbjct: 347 LEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILL 402
Score = 100 bits (248), Expect = 2e-19
Identities = 50/172 (29%), Positives = 96/172 (55%)
Frame = -2
Query: 530 ITVSNVLSACAHLGALDTGKAVHNYIHAHTIKADLHVGNALIDMYFKCGCIKKALGVFEE 351
+T+ ++ AC+HLG + ++ YI + ++ D+++GN LIDMY + G + A +F+
Sbjct: 126 VTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRLGNLTAARKLFDN 185
Query: 350 MAEKDSVSWTSIITGLAVNGYAKEALRIFSHMLKEGVQPRDVTFVGVLVACTHAGLVDEG 171
M ++D +SWTS+ITG + +A+++F M+ V+P VT VL AC H G +D G
Sbjct: 186 MPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVG 245
Query: 170 VQYFESMKKVHRIEPRMKHYGCIVDLLSRSGFLDRAYEFITSIPITPDAIVW 15
+++ H ++ + ++D+ + G +++A E + D++ W
Sbjct: 246 WAVHHYIRR-HGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMK-DKDSVSW 295
Score = 79.0 bits (193), Expect = 4e-13
Identities = 55/186 (29%), Positives = 91/186 (48%), Gaps = 10/186 (5%)
Frame = -2
Query: 530 ITVSNVLSACAHLGALDTG---KAVHNYIHAHTIKAD----LHVGNALIDMYFKCGCIKK 372
+ +S+ ++ A + AL T + + IH H +K L V NALI MY CG +
Sbjct: 18 VALSSTIAPAALVVALTTNINASTISSSIHVHALKLGFESYLFVSNALIHMYAMCGQLGF 77
Query: 371 ALGVFEEMAEKDSVSWTSIITGLAVNGYAKEALRIFSHMLKEGVQPRDVTFVGVLVACTH 192
A +F+ M ++D VSW ++I G + KE LR+F M ++ VT V +++AC+H
Sbjct: 78 AQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSH 137
Query: 191 AG---LVDEGVQYFESMKKVHRIEPRMKHYGCIVDLLSRSGFLDRAYEFITSIPITPDAI 21
G D V+Y K + +E + ++D+ R G L A + ++P D I
Sbjct: 138 LGDWEFADSMVKYI----KENNLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMP-KRDVI 192
Query: 20 VWRILL 3
W ++
Sbjct: 193 SWTSMI 198
>ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 252 bits (643), Expect = 3e-65
Identities = 117/176 (66%), Positives = 148/176 (84%)
Frame = -2
Query: 530 ITVSNVLSACAHLGALDTGKAVHNYIHAHTIKADLHVGNALIDMYFKCGCIKKALGVFEE 351
ITV++VLSACAH G+LD G+A H+YI + +KAD++VGNALIDMY KCG ++KAL VF+E
Sbjct: 311 ITVASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKE 370
Query: 350 MAEKDSVSWTSIITGLAVNGYAKEALRIFSHMLKEGVQPRDVTFVGVLVACTHAGLVDEG 171
M +KDSVSWTSII+GLAVNG+A AL FS ML+E VQP FVG+L+AC HAGLVD+G
Sbjct: 371 MRKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGILLACAHAGLVDKG 430
Query: 170 VQYFESMKKVHRIEPRMKHYGCIVDLLSRSGFLDRAYEFITSIPITPDAIVWRILL 3
++YFESM+KV+ ++P MKHYGC+VDLLSRSG L RA+EFI +P+TPD ++WRILL
Sbjct: 431 LEYFESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWRILL 486
Score = 92.4 bits (228), Expect = 4e-17
Identities = 54/207 (26%), Positives = 102/207 (49%), Gaps = 31/207 (14%)
Frame = -2
Query: 530 ITVSNVLSACAHLGALDTGKAVHNYIHAHTIKADLHVGNALIDMYFKCGCIKKALGVFEE 351
+T+ V+ AC LG A+ +YI + ++ D+++GN LIDMY + G + A GVF++
Sbjct: 179 VTMVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQ 238
Query: 350 -------------------------------MAEKDSVSWTSIITGLAVNGYAKEALRIF 264
M+++D +SWT++IT + G EALR+F
Sbjct: 239 MQWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLF 298
Query: 263 SHMLKEGVQPRDVTFVGVLVACTHAGLVDEGVQYFESMKKVHRIEPRMKHYGCIVDLLSR 84
M++ V+P ++T VL AC H G +D G + ++K + ++ + ++D+ +
Sbjct: 299 KEMMESKVKPDEITVASVLSACAHTGSLDVGEAAHDYIQK-YDVKADIYVGNALIDMYCK 357
Query: 83 SGFLDRAYEFITSIPITPDAIVWRILL 3
G +++A E + D++ W ++
Sbjct: 358 CGVVEKALEVFKEMR-KKDSVSWTSII 383
Score = 79.7 bits (195), Expect = 2e-13
Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 3/159 (1%)
Frame = -2
Query: 530 ITVSNVLSACAHLGALDTGKAVHNYIHAHTIKADLHVGNALIDMYFKCGCIKKALGVFEE 351
+T + ACA + + G +H + ++ L+V NALI+MY CG + A VF+E
Sbjct: 78 LTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVFDE 137
Query: 350 MAEKDSVSWTSIITGLAVNGYAKEALRIFSHMLKEGVQPRDVTFVGVLVACTHA---GLV 180
M E+D VSW S++ G +E L +F M GV+ VT V V++ACT G+
Sbjct: 138 MPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVA 197
Query: 179 DEGVQYFESMKKVHRIEPRMKHYGCIVDLLSRSGFLDRA 63
D V Y E + +E + ++D+ R G + A
Sbjct: 198 DAMVDYIEE----NNVEIDVYLGNTLIDMYGRRGLVHLA 232
>ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 251 bits (641), Expect = 5e-65
Identities = 117/176 (66%), Positives = 146/176 (82%)
Frame = -2
Query: 530 ITVSNVLSACAHLGALDTGKAVHNYIHAHTIKADLHVGNALIDMYFKCGCIKKALGVFEE 351
ITV++VLSACAH+GALD G+AVH YI + + AD++VGNALIDMY KCG ++K L VFEE
Sbjct: 1029 ITVASVLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEE 1088
Query: 350 MAEKDSVSWTSIITGLAVNGYAKEALRIFSHMLKEGVQPRDVTFVGVLVACTHAGLVDEG 171
M ++DSVSWTS+I GLAVNG A AL +FS ML+EGV+P TFVGVL+AC HAG+VD+G
Sbjct: 1089 MGKRDSVSWTSVIAGLAVNGSADSALNLFSLMLREGVRPTHGTFVGVLLACAHAGVVDKG 1148
Query: 170 VQYFESMKKVHRIEPRMKHYGCIVDLLSRSGFLDRAYEFITSIPITPDAIVWRILL 3
++YFESM++V+ + P MKHYGC+VDLLSRSG L RAYEFI +P+ PD +VWRILL
Sbjct: 1149 LEYFESMERVYGLTPEMKHYGCVVDLLSRSGNLGRAYEFIKRMPMDPDVVVWRILL 1204
Score = 77.4 bits (189), Expect = 1e-12
Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 31/186 (16%)
Frame = -2
Query: 530 ITVSNVLSACAHLGALDTGKAVHNYIHAHTIKADLHVGNALIDM---------------- 399
+T+ V+ AC LG A+ YI + ++ D+++GN LIDM
Sbjct: 897 VTMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDR 956
Query: 398 ---------------YFKCGCIKKALGVFEEMAEKDSVSWTSIITGLAVNGYAKEALRIF 264
Y K G + A +F++M +D +SWTS+I+ + G +A+R+F
Sbjct: 957 MRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLF 1016
Query: 263 SHMLKEGVQPRDVTFVGVLVACTHAGLVDEGVQYFESMKKVHRIEPRMKHYGCIVDLLSR 84
M+ V+P ++T VL AC H G +D G E ++K + + + ++D+ +
Sbjct: 1017 QEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEYIRK-YDVNADIYVGNALIDMYCK 1075
Query: 83 SGFLDR 66
G +++
Sbjct: 1076 CGAVEK 1081
Score = 65.5 bits (158), Expect = 5e-09
Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 7/163 (4%)
Frame = -2
Query: 530 ITVSNVLSACAHLGALDTGKAVHNYIHAHTIK----ADLHVGNALIDMYFKCGCIKKALG 363
+T +L ACA + + +HA +K +DL V NALI Y + A
Sbjct: 797 LTYPFLLKACARISNVSC-----TTVHARVLKLGFDSDLFVSNALIHGYAGFCELGFARK 851
Query: 362 VFEEMAEKDSVSWTSIITGLAVNGYAKEALRIFSHMLKEGVQPRDVTFVGVLVACT---H 192
VF+EM+E+D VSW S+I G E L +F M V+ VT V V++ACT
Sbjct: 852 VFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLGE 911
Query: 191 AGLVDEGVQYFESMKKVHRIEPRMKHYGCIVDLLSRSGFLDRA 63
G+VD ++Y E +++E + ++D+ R +D A
Sbjct: 912 WGVVDAMIEYIEE----NKVEVDVYLGNTLIDMYGRRSMVDLA 950
>ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223549972|gb|EEF51459.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 641
Score = 248 bits (633), Expect = 4e-64
Identities = 113/176 (64%), Positives = 144/176 (81%)
Frame = -2
Query: 530 ITVSNVLSACAHLGALDTGKAVHNYIHAHTIKADLHVGNALIDMYFKCGCIKKALGVFEE 351
ITVS+VLSAC+HLG LDTG+ VH Y+ H IK+D++VGNALIDMY KCG + KAL VF +
Sbjct: 391 ITVSSVLSACSHLGLLDTGQTVHEYMCRHDIKSDVYVGNALIDMYCKCGVVDKALEVFHD 450
Query: 350 MAEKDSVSWTSIITGLAVNGYAKEALRIFSHMLKEGVQPRDVTFVGVLVACTHAGLVDEG 171
M +KDSVSWTS+I GLAVNG+ +FS ML++G+QP +F+G+L+ACTHAGLVD+G
Sbjct: 451 MKKKDSVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQPTHGSFIGILLACTHAGLVDKG 510
Query: 170 VQYFESMKKVHRIEPRMKHYGCIVDLLSRSGFLDRAYEFITSIPITPDAIVWRILL 3
++YFESM+ V+ + P MKHYGC+VDLLSRSG LDRAYEFI +P+ PD ++WRILL
Sbjct: 511 LEYFESMEHVYGLRPEMKHYGCVVDLLSRSGELDRAYEFIKQMPVVPDVVLWRILL 566
Score = 87.8 bits (216), Expect = 9e-16
Identities = 56/207 (27%), Positives = 98/207 (47%), Gaps = 31/207 (14%)
Frame = -2
Query: 530 ITVSNVLSACAHLGALDTGKAVHNYIHAHTIKADLHVGNALIDMYFKCGCIKKALGVFEE 351
+T+ V+ AC++L ++ YI + D+++GN+LIDMY + G + A VF+
Sbjct: 259 VTMVKVILACSYLCEDGVVDSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDR 318
Query: 350 MAEKDSVSWTSIITGLAVNG-------------------------------YAKEALRIF 264
M EK+ VSW +++TG A G +AL++F
Sbjct: 319 MQEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLF 378
Query: 263 SHMLKEGVQPRDVTFVGVLVACTHAGLVDEGVQYFESMKKVHRIEPRMKHYGCIVDLLSR 84
M+ V+P ++T VL AC+H GL+D G E M + H I+ + ++D+ +
Sbjct: 379 QEMMDANVKPDEITVSSVLSACSHLGLLDTGQTVHEYMCR-HDIKSDVYVGNALIDMYCK 437
Query: 83 SGFLDRAYEFITSIPITPDAIVWRILL 3
G +D+A E + D++ W ++
Sbjct: 438 CGVVDKALEVFHDMK-KKDSVSWTSMI 463
Score = 65.5 bits (158), Expect = 5e-09
Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 3/159 (1%)
Frame = -2
Query: 530 ITVSNVLSACAHLGALDTGKAVHNYIHAHTIKADLHVGNALIDMYFKCGCIKKALGVFEE 351
+T + AC+ + + G+ H + + L + N+LI MY G + A VF++
Sbjct: 158 LTFIYLFKACSRVKDVLHGQVFHVQVLKLGFGSYLFIENSLIRMYGYFGELGYAQKVFDK 217
Query: 350 MAEKDSVSWTSIITGLAVNGYAKEALRIFSHMLKEGVQPRDVTFVGVLVACTHA---GLV 180
M ++D VSW S+I G + KE L +F+ M + V VT V V++AC++ G+V
Sbjct: 218 MDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVILACSYLCEDGVV 277
Query: 179 DEGVQYFESMKKVHRIEPRMKHYGCIVDLLSRSGFLDRA 63
D V+Y E ++ + ++D+ R G +D A
Sbjct: 278 DSMVKYIED----KHVDIDVYLGNSLIDMYGRRGLVDLA 312