BLASTX nr result

ID: Coptis23_contig00025699 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025699
         (891 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004152166.1| PREDICTED: 50S ribosomal protein L18-like is...   198   2e-48
gb|AFK35500.1| unknown [Lotus japonicus]                              197   3e-48
ref|XP_002523696.1| conserved hypothetical protein [Ricinus comm...   196   5e-48
ref|XP_002331445.1| predicted protein [Populus trichocarpa] gi|2...   196   5e-48
ref|XP_004165546.1| PREDICTED: LOW QUALITY PROTEIN: 50S ribosoma...   196   6e-48

>ref|XP_004152166.1| PREDICTED: 50S ribosomal protein L18-like isoform 1 [Cucumis
           sativus] gi|449468916|ref|XP_004152167.1| PREDICTED: 50S
           ribosomal protein L18-like isoform 2 [Cucumis sativus]
          Length = 129

 Score =  198 bits (503), Expect = 2e-48
 Identities = 91/123 (73%), Positives = 113/123 (91%)
 Frame = -2

Query: 866 MTVMKRYVLRLFISLKYVTANVVDRNNGRIVATASTIEHSLKEALECGRSCNXXXXXAVG 687
           MT++KRYVLRLF+SLKY+TANVVDRNNGR+VATAST+EHS+K +LECGRSCN      VG
Sbjct: 1   MTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 60

Query: 686 EVLAMRLKVEGLDQGEGRGIHADVEKEIQKKGFKSQTKVWAIVNALKNNGVKVVLDDNGD 507
           EVLAMRLKV+GL+QG+GRGIHAD++KEI+KKGFK+ TK+WAIVN+LKNNGVK++LD+N D
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHADIKKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVD 120

Query: 506 NGS 498
           + +
Sbjct: 121 DNA 123


>gb|AFK35500.1| unknown [Lotus japonicus]
          Length = 128

 Score =  197 bits (501), Expect = 3e-48
 Identities = 93/123 (75%), Positives = 110/123 (89%)
 Frame = -2

Query: 866 MTVMKRYVLRLFISLKYVTANVVDRNNGRIVATASTIEHSLKEALECGRSCNXXXXXAVG 687
           MT+MKRYVLRLF SLKY+TANVVDRNNGRIVAT+ST+EH++KE+LECGRSCN      VG
Sbjct: 1   MTLMKRYVLRLFTSLKYITANVVDRNNGRIVATSSTVEHAMKESLECGRSCNAKAAAIVG 60

Query: 686 EVLAMRLKVEGLDQGEGRGIHADVEKEIQKKGFKSQTKVWAIVNALKNNGVKVVLDDNGD 507
           EVLA RLKVEGL++GEGRGIH +V+KE++KKGFK+QTK+WA+VNALKNNGVK+VLDD  D
Sbjct: 61  EVLARRLKVEGLNEGEGRGIHVNVKKEVEKKGFKNQTKIWAVVNALKNNGVKLVLDDEDD 120

Query: 506 NGS 498
             S
Sbjct: 121 TNS 123


>ref|XP_002523696.1| conserved hypothetical protein [Ricinus communis]
           gi|223537000|gb|EEF38636.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 129

 Score =  196 bits (499), Expect = 5e-48
 Identities = 91/121 (75%), Positives = 108/121 (89%)
 Frame = -2

Query: 866 MTVMKRYVLRLFISLKYVTANVVDRNNGRIVATASTIEHSLKEALECGRSCNXXXXXAVG 687
           MTV+KRYVLR+FISLKY+TANVVDRNNGRIVATAST+EHS+K  LECGRSCN      VG
Sbjct: 1   MTVLKRYVLRMFISLKYITANVVDRNNGRIVATASTVEHSIKNTLECGRSCNAKAAAIVG 60

Query: 686 EVLAMRLKVEGLDQGEGRGIHADVEKEIQKKGFKSQTKVWAIVNALKNNGVKVVLDDNGD 507
           EVLAMRLKVEGL+QG+GRGIH D  KE++KKGFK++TK+WAI+NAL+NNGVKV+ +DN +
Sbjct: 61  EVLAMRLKVEGLEQGQGRGIHVDANKEVEKKGFKNRTKIWAIINALRNNGVKVISNDNDE 120

Query: 506 N 504
           N
Sbjct: 121 N 121


>ref|XP_002331445.1| predicted protein [Populus trichocarpa] gi|222873523|gb|EEF10654.1|
           predicted protein [Populus trichocarpa]
          Length = 128

 Score =  196 bits (499), Expect = 5e-48
 Identities = 93/124 (75%), Positives = 110/124 (88%)
 Frame = -2

Query: 866 MTVMKRYVLRLFISLKYVTANVVDRNNGRIVATASTIEHSLKEALECGRSCNXXXXXAVG 687
           MT++KRYVLRLFISLKY+TANVVDR NGRIVATAST+EHS+K  LECGRSCN      VG
Sbjct: 1   MTLLKRYVLRLFISLKYITANVVDRKNGRIVATASTVEHSIKNTLECGRSCNAKSATVVG 60

Query: 686 EVLAMRLKVEGLDQGEGRGIHADVEKEIQKKGFKSQTKVWAIVNALKNNGVKVVLDDNGD 507
           EVLAMRLKV GL+QG+GRGIH D+EKE++KKGFK++TK+WAIVNALKNNGVK++LD++  
Sbjct: 61  EVLAMRLKVGGLEQGQGRGIHVDMEKEVEKKGFKNRTKIWAIVNALKNNGVKIILDEDNV 120

Query: 506 NGSR 495
           N SR
Sbjct: 121 NTSR 124


>ref|XP_004165546.1| PREDICTED: LOW QUALITY PROTEIN: 50S ribosomal protein L18-like
           [Cucumis sativus]
          Length = 129

 Score =  196 bits (498), Expect = 6e-48
 Identities = 91/121 (75%), Positives = 111/121 (91%)
 Frame = -2

Query: 866 MTVMKRYVLRLFISLKYVTANVVDRNNGRIVATASTIEHSLKEALECGRSCNXXXXXAVG 687
           MT++KRYVLRLF+SLKY+TANVVDRNNGR+VATAST+EHS+K +LECGRSCN      VG
Sbjct: 1   MTLLKRYVLRLFLSLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 60

Query: 686 EVLAMRLKVEGLDQGEGRGIHADVEKEIQKKGFKSQTKVWAIVNALKNNGVKVVLDDNGD 507
           EVLAMRLKV+GL+QG+GRGIHAD +KEI+KKGFK+ TK+WAIVN+LKNNGVK++LD+N D
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHADXKKEIEKKGFKNHTKIWAIVNSLKNNGVKLILDNNVD 120

Query: 506 N 504
           +
Sbjct: 121 D 121


Top