BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025638
         (747 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocar...    59   1e-06
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...    58   2e-06
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...    58   2e-06
ref|XP_002299208.1| RNA polymerase IV subunit [Populus trichocar...    56   7e-06

>ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocarpa]
            gi|222841357|gb|EEE78904.1| RNA polymerase IV subunit
            [Populus trichocarpa]
          Length = 924

 Score = 58.5 bits (140), Expect = 1e-06
 Identities = 55/166 (33%), Positives = 74/166 (44%), Gaps = 21/166 (12%)
 Frame = -1

Query: 435  IP*VFMMFHPSCIALRCRYNELVELQSRNH-----QTVIISILNFLPLTRWLNRLSS*V- 274
            IP  F    P    LR  +NELVELQ  NH     Q V   IL    L   ++  S    
Sbjct: 636  IPESFKAISPLLCNLRSTFNELVELQVENHIRDVKQPVREFILTSSALGYLIDSKSDAAV 695

Query: 273  -------------VSD*GQVYLMNLVEDMTSLFLCKFAANGVECPS--LGLIKNCVFLWS 139
                         VSD G++Y   LVED+ S FL K+ AN  + PS   GLI+N  F   
Sbjct: 696  TKVVQQIGFLGLQVSDRGKLYSKTLVEDLASHFLSKYPANLFDYPSAQYGLIQNSFFHGL 755

Query: 138  *TPMRIWYILCSRENLLFVCLEV*LHREPYSN*MTVLGDVVLCYDG 1
                 + + + +RE ++     +      + N M +L DVV+CYDG
Sbjct: 756  DAYEEMAHSISTREVIVRSSRGLSEPGTLFKNLMAILRDVVICYDG 801


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 21/180 (11%)
 Frame = -1

Query: 477  YLLERAFRSYVLKIIP*VFMMFHPSCIALRCRYNELVELQSRNH-QTVIISILNFLPLTR 301
            Y +  AF   + K I     +  P    LR  +NELVELQ  NH ++V +   NF+    
Sbjct: 624  YSMPMAFLQALQKNI----QVLSPLLYQLRSTFNELVELQLENHLRSVKVPFTNFILKLS 679

Query: 300  WLNRLSS*V------------------VSD*GQVYLMNLVEDMTSLFLCKFAANGVECPS 175
             L +L                      +SD G+ Y  +L+ED+ SLF  +++++ ++ PS
Sbjct: 680  SLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKSLIEDVASLFHNRYSSDKIDYPS 739

Query: 174  --LGLIKNCVFLWS*TPMRIWYILCSRENLLFVCLEV*LHREPYSN*MTVLGDVVLCYDG 1
               GL+K C F        + + + +RE ++     +      + N M +L DVV+CYDG
Sbjct: 740  AEFGLVKGCFFHGLDPYEEMVHSISTREVMVRSSRGLTEPGTLFKNLMAILRDVVICYDG 799


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1-like [Cucumis sativus]
          Length = 2019

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 21/180 (11%)
 Frame = -1

Query: 477  YLLERAFRSYVLKIIP*VFMMFHPSCIALRCRYNELVELQSRNH-QTVIISILNFLPLTR 301
            Y +  AF   + K I     +  P    LR  +NELVELQ  NH ++V +   NF+    
Sbjct: 654  YSMPMAFLQALQKNI----QVLSPLLYQLRSTFNELVELQLENHLRSVKVPFTNFILKLS 709

Query: 300  WLNRLSS*V------------------VSD*GQVYLMNLVEDMTSLFLCKFAANGVECPS 175
             L +L                      +SD G+ Y  +L+ED+ SLF  +++++ ++ PS
Sbjct: 710  SLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKSLIEDVASLFHNRYSSDKIDYPS 769

Query: 174  --LGLIKNCVFLWS*TPMRIWYILCSRENLLFVCLEV*LHREPYSN*MTVLGDVVLCYDG 1
               GL+K C F        + + + +RE ++     +      + N M +L DVV+CYDG
Sbjct: 770  AEFGLVKGCFFHGLDPYEEMVHSISTREVMVRSSRGLTEPGTLFKNLMAILRDVVICYDG 829


>ref|XP_002299208.1| RNA polymerase IV subunit [Populus trichocarpa]
            gi|222846466|gb|EEE84013.1| RNA polymerase IV subunit
            [Populus trichocarpa]
          Length = 842

 Score = 56.2 bits (134), Expect = 7e-06
 Identities = 51/162 (31%), Positives = 72/162 (44%), Gaps = 21/162 (12%)
 Frame = -1

Query: 423  FMMFHPSCIALRCRYNELVELQSRNH-QTVIISILNFLPLTRWLNRLSS*V--------- 274
            F +  P    LR  YNELVELQ  NH Q V   +L F+  +  L  L             
Sbjct: 558  FKVISPLLCNLRSTYNELVELQVENHIQDVKTPVLEFILTSSALGYLIDSKSDGAVAKLV 617

Query: 273  ---------VSD*GQVYLMNLVEDMTSLFLCKFAANGVECPS--LGLIKNCVFLWS*TPM 127
                     VSD G++Y   LVED+ S F  K+  N +  PS   GLI++  F       
Sbjct: 618  QQIGFLGLQVSDRGKLYSKTLVEDLASHFQSKYPTNLLNYPSAQYGLIQSSFFHGLDAYE 677

Query: 126  RIWYILCSRENLLFVCLEV*LHREPYSN*MTVLGDVVLCYDG 1
             + + + +RE ++     +      + N M +L DVV+CYDG
Sbjct: 678  EMAHSISTREVIVRSSRGLSEPGTLFKNLMAILRDVVICYDG 719