BLASTX nr result
ID: Coptis23_contig00025634
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00025634
(426 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAF50334.1| hypothetical protein [Crucihimalaya wallichii] g... 98 2e-33
dbj|BAF50245.1| hypothetical protein [Capsella bursa-pastoris] g... 98 8e-33
emb|CAF28642.1| ycf68 [Nymphaea alba] gi|50250389|emb|CAF28655.1... 99 3e-30
ref|YP_358635.1| ORF170 [Phalaenopsis aphrodite subsp. formosana... 129 2e-28
ref|YP_003540978.1| hypothetical chloroplast RF68 [Phoenix dacty... 57 3e-16
>dbj|BAF50334.1| hypothetical protein [Crucihimalaya wallichii]
gi|134286725|dbj|BAF50348.1| hypothetical protein
[Crucihimalaya wallichii] gi|134286888|dbj|BAF50509.1|
hypothetical protein [Lepidium virginicum]
gi|134286902|dbj|BAF50523.1| hypothetical protein
[Lepidium virginicum] gi|134286977|dbj|BAF50597.1|
hypothetical protein [Lobularia maritima]
gi|134286991|dbj|BAF50611.1| hypothetical protein
[Lobularia maritima]
Length = 111
Score = 98.2 bits (243), Expect(3) = 2e-33
Identities = 47/49 (95%), Positives = 47/49 (95%)
Frame = -1
Query: 252 FFHAFPGGLEKAAINRISLILPSRKEEREILFPFRRDQEIGSSHKKNAW 106
FFHAFPGGLEKAAINRI LILPSRKEEREILFPFRRDQEIGSS KKNAW
Sbjct: 32 FFHAFPGGLEKAAINRIFLILPSRKEEREILFPFRRDQEIGSSRKKNAW 80
Score = 55.5 bits (132), Expect(3) = 2e-33
Identities = 28/30 (93%), Positives = 28/30 (93%)
Frame = -2
Query: 104 INNSLLGLRPPQSL*TPPISAMGCVYLSIS 15
INNSLLGLRPPQSL TPPISAMG VYLSIS
Sbjct: 82 INNSLLGLRPPQSLRTPPISAMGRVYLSIS 111
Score = 34.7 bits (78), Expect(3) = 2e-33
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -3
Query: 301 SPQNERGDGGIVPFEPFFSCF 239
SP + GDGGIVPFEPFF F
Sbjct: 16 SPLSFWGDGGIVPFEPFFHAF 36
>dbj|BAF50245.1| hypothetical protein [Capsella bursa-pastoris]
gi|134286635|dbj|BAF50259.1| hypothetical protein
[Capsella bursa-pastoris]
Length = 111
Score = 98.2 bits (243), Expect(3) = 8e-33
Identities = 47/49 (95%), Positives = 47/49 (95%)
Frame = -1
Query: 252 FFHAFPGGLEKAAINRISLILPSRKEEREILFPFRRDQEIGSSHKKNAW 106
FFHAFPGGLEKAAINRI LILPSRKEEREILFPFRRDQEIGSS KKNAW
Sbjct: 32 FFHAFPGGLEKAAINRIFLILPSRKEEREILFPFRRDQEIGSSRKKNAW 80
Score = 53.1 bits (126), Expect(3) = 8e-33
Identities = 27/30 (90%), Positives = 27/30 (90%)
Frame = -2
Query: 104 INNSLLGLRPPQSL*TPPISAMGCVYLSIS 15
INNSLLGLRPPQSL TPPISA G VYLSIS
Sbjct: 82 INNSLLGLRPPQSLRTPPISAKGRVYLSIS 111
Score = 34.7 bits (78), Expect(3) = 8e-33
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -3
Query: 301 SPQNERGDGGIVPFEPFFSCF 239
SP + GDGGIVPFEPFF F
Sbjct: 16 SPLSFWGDGGIVPFEPFFHAF 36
>emb|CAF28642.1| ycf68 [Nymphaea alba] gi|50250389|emb|CAF28655.1| ycf68 [Nymphaea
alba]
Length = 101
Score = 99.0 bits (245), Expect(3) = 3e-30
Identities = 49/53 (92%), Positives = 49/53 (92%), Gaps = 2/53 (3%)
Frame = -1
Query: 252 FFHAFPGGLEKAAINRISLILPSRK--EEREILFPFRRDQEIGSSHKKNAWYK 100
FFHAFPGGLEKAAINRISLI PSRK EEREILFPFR DQEIGSSHKKNAWYK
Sbjct: 49 FFHAFPGGLEKAAINRISLIFPSRKRKEEREILFPFRGDQEIGSSHKKNAWYK 101
Score = 45.4 bits (106), Expect(3) = 3e-30
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = -3
Query: 301 SPQNERGDGGIVPFEPFFSCF 239
SPQNERGDGGIVPFEPFF F
Sbjct: 33 SPQNERGDGGIVPFEPFFHAF 53
Score = 33.1 bits (74), Expect(3) = 3e-30
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = -2
Query: 401 MYSYLSSTGLGSASMGK 351
M SYLSSTGLGSASMGK
Sbjct: 1 MDSYLSSTGLGSASMGK 17
>ref|YP_358635.1| ORF170 [Phalaenopsis aphrodite subsp. formosana]
gi|58802851|gb|AAW82571.1| ORF170 [Phalaenopsis
aphrodite subsp. formosana]
Length = 170
Score = 129 bits (324), Expect = 2e-28
Identities = 82/143 (57%), Positives = 89/143 (62%), Gaps = 2/143 (1%)
Frame = -1
Query: 426 ESIHPLSVYVQLSLEHRFRFGLNGKIKWST*QRIFTDQELRDHPRMKGVTEGSYHSSLFF 247
ESIHPLSVY QLSLEHR RFGLN K++ T + + R G G FF
Sbjct: 26 ESIHPLSVYGQLSLEHRLRFGLNEKMEHLT-THLHRPRTTRSPLSFWG-DRGIIPFEPFF 83
Query: 246 HAFPGGLEKAAINRISLILPSRKEEREILFPFRRDQEIGSSH--KKNAWYK*LASWSSTP 73
HA GGL+KAAINRI ILPSRKEEREILFPFRRDQEIGSSH ++ P
Sbjct: 84 HA--GGLKKAAINRIFRILPSRKEEREILFPFRRDQEIGSSHNIRRMLGINNSLLGFRPP 141
Query: 72 SVTMNAPDQCNGMCLFIYLLTRN 4
DQCNGMCLFIYLLTRN
Sbjct: 142 QSLRALLDQCNGMCLFIYLLTRN 164
>ref|YP_003540978.1| hypothetical chloroplast RF68 [Phoenix dactylifera]
gi|292559577|ref|YP_003540992.1| hypothetical
chloroplast RF68 [Phoenix dactylifera]
gi|377819425|ref|YP_005097920.1| hypothetical protein
ycf68 (chloroplast) [Colocasia esculenta]
gi|377819438|ref|YP_005097933.1| hypothetical protein
ycf68 (chloroplast) [Colocasia esculenta]
gi|294620624|gb|ADF28193.1| hypothetical chloroplast
RF68 (chloroplast) [Phoenix dactylifera]
gi|294620638|gb|ADF28207.1| hypothetical chloroplast
RF68 (chloroplast) [Phoenix dactylifera]
gi|340536686|gb|AEK48453.1| hypothetical protein ycf68
(chloroplast) [Colocasia esculenta]
gi|340536699|gb|AEK48466.1| hypothetical protein ycf68
(chloroplast) [Colocasia esculenta]
gi|340536773|gb|AEK48539.1| hypothetical protein ycf68
(chloroplast) [Colocasia esculenta]
gi|340536786|gb|AEK48552.1| hypothetical protein ycf68
(chloroplast) [Colocasia esculenta]
Length = 114
Score = 56.6 bits (135), Expect(2) = 3e-16
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = -3
Query: 301 SPQNERGDGGIVPFEPFFSCFSRRSGESCNQ 209
SP + GDGGIVPFEPFFSCFSRRSGES NQ
Sbjct: 84 SPLSFWGDGGIVPFEPFFSCFSRRSGESSNQ 114
Score = 53.1 bits (126), Expect(2) = 3e-16
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = -1
Query: 426 ESIHPLSVYVQLSLEHRFRFGLNGKIKWST 337
ESIHPLSVY QLSLEHRFRFGLNGK++ T
Sbjct: 44 ESIHPLSVYGQLSLEHRFRFGLNGKMEHLT 73