BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025633
         (330 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003604154.1| Ycf68 protein [Medicago truncatula] gi|35550...   114   1e-23
ref|XP_003599576.1| Ycf68 protein [Medicago truncatula] gi|35548...   114   1e-23
ref|YP_636345.1| hypothetical protein EuglglCp070 [Eucalyptus gl...    96   2e-18
ref|ZP_01976988.1| hypothetical protein A5E_B0095 [Vibrio choler...    87   2e-15
ref|YP_003540978.1| hypothetical chloroplast RF68 [Phoenix dacty...    65   1e-12

>ref|XP_003604154.1| Ycf68 protein [Medicago truncatula] gi|355505209|gb|AES86351.1|
           Ycf68 protein [Medicago truncatula]
          Length = 237

 Score =  114 bits (284), Expect = 1e-23
 Identities = 59/81 (72%), Positives = 61/81 (75%)
 Frame = +3

Query: 87  RALSHMDSSMCSSAPDPEMWIIQGTLAWRTPPVRTGV*NQISPQEDRWGDSGEIQCRSNF 266
           RALSH+DSSMCSSAPDPEMWIIQGTL                  EDRWGDSGEIQCRSNF
Sbjct: 119 RALSHIDSSMCSSAPDPEMWIIQGTL------------------EDRWGDSGEIQCRSNF 160

Query: 267 LFTRGIRAVRGGPPRLLSSRE 329
           LFTRGIRAV+GGP  LLSSRE
Sbjct: 161 LFTRGIRAVQGGPSWLLSSRE 181


>ref|XP_003599576.1| Ycf68 protein [Medicago truncatula] gi|355488624|gb|AES69827.1|
           Ycf68 protein [Medicago truncatula]
          Length = 237

 Score =  114 bits (284), Expect = 1e-23
 Identities = 59/81 (72%), Positives = 61/81 (75%)
 Frame = +3

Query: 87  RALSHMDSSMCSSAPDPEMWIIQGTLAWRTPPVRTGV*NQISPQEDRWGDSGEIQCRSNF 266
           RALSH+DSSMCSSAPDPEMWIIQGTL                  EDRWGDSGEIQCRSNF
Sbjct: 119 RALSHIDSSMCSSAPDPEMWIIQGTL------------------EDRWGDSGEIQCRSNF 160

Query: 267 LFTRGIRAVRGGPPRLLSSRE 329
           LFTRGIRAV+GGP  LLSSRE
Sbjct: 161 LFTRGIRAVQGGPSWLLSSRE 181


>ref|YP_636345.1| hypothetical protein EuglglCp070 [Eucalyptus globulus subsp.
           globulus] gi|108802701|ref|YP_636358.1| hypothetical
           protein EuglglCp084 [Eucalyptus globulus subsp.
           globulus] gi|122219157|sp|Q49KT9.1|YCF68_EUCGG RecName:
           Full=Uncharacterized protein ycf68; AltName: Full=ORF113
           gi|60460854|gb|AAX21074.1| hypothetical protein
           [Eucalyptus globulus subsp. globulus]
           gi|60460867|gb|AAX21087.1| hypothetical protein
           [Eucalyptus globulus subsp. globulus]
          Length = 113

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 50/67 (74%), Positives = 52/67 (77%)
 Frame = +3

Query: 63  LRRCAWAVRALSHMDSSMCSSAPDPEMWIIQGTLAWRTPPVRTGV*NQISPQEDRWGDSG 242
           +RRCAWAVRALSHMDSSMCSSAPDPEMWIIQGTLAWRT PVRTG   +  P   R    G
Sbjct: 1   MRRCAWAVRALSHMDSSMCSSAPDPEMWIIQGTLAWRTSPVRTGF--ETKPLLRR--IDG 56

Query: 243 EIQCRSN 263
            IQ RSN
Sbjct: 57  AIQVRSN 63



 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 42/45 (93%), Positives = 42/45 (93%)
 Frame = +1

Query: 196 FETKFLLRRIDGAIQVRSNVDPTFYSLVGSGRSGGDHQGSSLLEN 330
           FETK LLRRIDGAIQVRSNVDPTFYSLVGSGRSGGD  GSSLLEN
Sbjct: 45  FETKPLLRRIDGAIQVRSNVDPTFYSLVGSGRSGGDPHGSSLLEN 89


>ref|ZP_01976988.1| hypothetical protein A5E_B0095 [Vibrio cholerae B33]
           gi|126518156|gb|EAZ75381.1| hypothetical protein
           A5E_B0095 [Vibrio cholerae B33]
          Length = 42

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 40/42 (95%), Positives = 41/42 (97%)
 Frame = -3

Query: 160 VPWMIHISGSGADEHIELSMWLRALTAQAQRRNYQGRALPLS 35
           +PWMIHI GSGADEHIELSMWLRALTAQAQRRNYQGRALPLS
Sbjct: 1   MPWMIHIPGSGADEHIELSMWLRALTAQAQRRNYQGRALPLS 42


>ref|YP_003540978.1| hypothetical chloroplast RF68 [Phoenix dactylifera]
           gi|292559577|ref|YP_003540992.1| hypothetical
           chloroplast RF68 [Phoenix dactylifera]
           gi|377819425|ref|YP_005097920.1| hypothetical protein
           ycf68 (chloroplast) [Colocasia esculenta]
           gi|377819438|ref|YP_005097933.1| hypothetical protein
           ycf68 (chloroplast) [Colocasia esculenta]
           gi|294620624|gb|ADF28193.1| hypothetical chloroplast
           RF68 (chloroplast) [Phoenix dactylifera]
           gi|294620638|gb|ADF28207.1| hypothetical chloroplast
           RF68 (chloroplast) [Phoenix dactylifera]
           gi|340536686|gb|AEK48453.1| hypothetical protein ycf68
           (chloroplast) [Colocasia esculenta]
           gi|340536699|gb|AEK48466.1| hypothetical protein ycf68
           (chloroplast) [Colocasia esculenta]
           gi|340536773|gb|AEK48539.1| hypothetical protein ycf68
           (chloroplast) [Colocasia esculenta]
           gi|340536786|gb|AEK48552.1| hypothetical protein ycf68
           (chloroplast) [Colocasia esculenta]
          Length = 114

 Score = 64.7 bits (156), Expect(2) = 1e-12
 Identities = 30/31 (96%), Positives = 31/31 (100%)
 Frame = +3

Query: 237 SGEIQCRSNFLFTRGIRAVRGGPPRLLSSRE 329
           +GEIQCRSNFLFTRGIRAVRGGPPRLLSSRE
Sbjct: 14  NGEIQCRSNFLFTRGIRAVRGGPPRLLSSRE 44



 Score = 33.1 bits (74), Expect(2) = 1e-12
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +2

Query: 167 MAYSSCSNRSLKPN 208
           MAYSSCSNRSLKPN
Sbjct: 1   MAYSSCSNRSLKPN 14