BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025613
         (375 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...    71   1e-16
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ...    69   7e-14
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    66   9e-14
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    65   1e-13
emb|CAB72467.1| putative protein [Arabidopsis thaliana]                66   1e-13

>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
           predicted protein [Populus trichocarpa]
          Length = 517

 Score = 70.9 bits (172), Expect(2) = 1e-16
 Identities = 27/65 (41%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
 Frame = +2

Query: 2   EDLCYPYAEGGLGIRNLEKVNQASNMKHIWKIITKAD-NLWVEWIQKNLIKDRKFWQLKI 178
           + +C P  EGGLGI+++++ N+ + +KHIW +   +D ++W  WI+ NL++ R FW +K 
Sbjct: 150 DQVCLPKKEGGLGIKSIKEWNKIALLKHIWNLCNDSDGSIWSTWIRSNLLRGRNFWTIKT 209

Query: 179 PHNCS 193
           P NCS
Sbjct: 210 PQNCS 214



 Score = 40.0 bits (92), Expect(2) = 1e-16
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +3

Query: 255 KIPHNCSWSWRNLLKGRTETAQIVVNQIGDGKNTNFWLD 371
           K P NCSW+W  +LK R+     +   IGDG  T+ W D
Sbjct: 208 KTPQNCSWAWGKILKLRSLAWPKMKYIIGDGMTTSLWFD 246


>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 489

 Score = 68.6 bits (166), Expect(2) = 7e-14
 Identities = 28/57 (49%), Positives = 41/57 (71%)
 Frame = +2

Query: 5   DLCYPYAEGGLGIRNLEKVNQASNMKHIWKIITKADNLWVEWIQKNLIKDRKFWQLK 175
           D+C P  EGGLG+R+L++ N  S +K IW+II+ AD+LWV+WI   L+K   FW ++
Sbjct: 246 DVCKPKDEGGLGLRSLKEANDVSCLKLIWRIISHADSLWVKWIHATLLKQVSFWAVR 302



 Score = 33.1 bits (74), Expect(2) = 7e-14
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 273 SWSWRNLLKGRTETAQIVVNQIGDGKNTNFWLD 371
           SW W+ +LK R    Q+   ++ +G +T FW D
Sbjct: 309 SWMWKKVLKFRDAAIQLCKAEVNNGAHTFFWYD 341


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score = 65.9 bits (159), Expect(2) = 9e-14
 Identities = 23/57 (40%), Positives = 42/57 (73%)
 Frame = +2

Query: 2   EDLCYPYAEGGLGIRNLEKVNQASNMKHIWKIITKADNLWVEWIQKNLIKDRKFWQL 172
           +++C P  EGGLG+++L + N+ S++K IW++++  D+LWV+W + NL+K   FW +
Sbjct: 584 DEICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKWTRMNLLKKESFWSI 640



 Score = 35.4 bits (80), Expect(2) = 9e-14
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 273 SWSWRNLLKGRTETAQIVVNQIGDGKNTNFWLD 371
           SW WR LLK R         ++ +G NT+FW D
Sbjct: 648 SWIWRRLLKHREVAKSFCKIEVNNGVNTSFWFD 680


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score = 64.7 bits (156), Expect(2) = 1e-13
 Identities = 22/56 (39%), Positives = 43/56 (76%)
 Frame = +2

Query: 8    LCYPYAEGGLGIRNLEKVNQASNMKHIWKIITKADNLWVEWIQKNLIKDRKFWQLK 175
            +C P  EGGLG+R+L++ N    +K +WKI++ +++LWV+W+ ++L+++  FW++K
Sbjct: 865  VCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVK 920



 Score = 36.2 bits (82), Expect(2) = 1e-13
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 273  SWSWRNLLKGRTETAQIVVNQIGDGKNTNFWLD 371
            SW W+ LLK R     +   ++G+GK T+FW D
Sbjct: 927  SWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYD 959


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score = 65.9 bits (159), Expect(2) = 1e-13
 Identities = 25/56 (44%), Positives = 41/56 (73%)
 Frame = +2

Query: 8   LCYPYAEGGLGIRNLEKVNQASNMKHIWKIITKADNLWVEWIQKNLIKDRKFWQLK 175
           +C P +EGGLG+R+L++ N    +K +W+II+  D+LWV+W++ NL+K   FW +K
Sbjct: 418 VCKPKSEGGLGLRSLKEANDVCCLKLVWRIISHGDSLWVKWVEHNLLKREIFWIVK 473



 Score = 35.0 bits (79), Expect(2) = 1e-13
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 273 SWSWRNLLKGRTETAQIVVNQIGDGKNTNFWLD 371
           SW W+ +LK R    +    ++G+G++T+FW D
Sbjct: 480 SWIWKKILKYRGVAKRFCKAEVGNGESTSFWFD 512