BLASTX nr result

ID: Coptis23_contig00025606 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025606
         (232 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004152693.1| PREDICTED: protein RER1B-like [Cucumis sativ...    80   2e-13
ref|XP_002510410.1| rer1 protein, putative [Ricinus communis] gi...    79   5e-13
ref|XP_002307664.1| predicted protein [Populus trichocarpa] gi|2...    75   4e-12
ref|XP_002282050.1| PREDICTED: protein RER1B [Vitis vinifera] gi...    75   6e-12
emb|CBI17492.3| unnamed protein product [Vitis vinifera]               75   7e-12

>ref|XP_004152693.1| PREDICTED: protein RER1B-like [Cucumis sativus]
           gi|449496096|ref|XP_004160038.1| PREDICTED: protein
           RER1B-like [Cucumis sativus]
          Length = 194

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 35/63 (55%), Positives = 48/63 (76%)
 Frame = -2

Query: 189 MEGVGDDVSSATAPFAKYRSDLSRMFQHYLDKLTPLASERWIGTGVLGTFFLLRVYLVQG 10
           MEGVG D +SA AP AK+R+D SR FQ+YLD+ TP   +RW+GT ++   ++LRV+ VQG
Sbjct: 1   MEGVGGDTASAVAPLAKWRNDFSRAFQYYLDRSTPHPVQRWLGTLLVAAIYVLRVFYVQG 60

Query: 9   FYL 1
           FY+
Sbjct: 61  FYV 63


>ref|XP_002510410.1| rer1 protein, putative [Ricinus communis]
           gi|223551111|gb|EEF52597.1| rer1 protein, putative
           [Ricinus communis]
          Length = 194

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 34/63 (53%), Positives = 43/63 (68%)
 Frame = -2

Query: 189 MEGVGDDVSSATAPFAKYRSDLSRMFQHYLDKLTPLASERWIGTGVLGTFFLLRVYLVQG 10
           MEG G D  S  APFAK+R++ SR FQ+YLD+ TP   ERW+GT      ++LRVY  QG
Sbjct: 1   MEGAGGDTDSIVAPFAKWRNEFSRTFQYYLDRSTPYPMERWLGTLAASAIYMLRVYYAQG 60

Query: 9   FYL 1
           FY+
Sbjct: 61  FYI 63


>ref|XP_002307664.1| predicted protein [Populus trichocarpa] gi|222857113|gb|EEE94660.1|
           predicted protein [Populus trichocarpa]
          Length = 194

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 33/63 (52%), Positives = 44/63 (69%)
 Frame = -2

Query: 189 MEGVGDDVSSATAPFAKYRSDLSRMFQHYLDKLTPLASERWIGTGVLGTFFLLRVYLVQG 10
           MEG G D ++  AP AK+R+D SR FQ YLD+ TP  +ERW+GT  +   ++LR Y VQG
Sbjct: 1   MEGNGGDAANVVAPLAKWRNDFSRAFQFYLDRSTPHPTERWLGTLAVAAVYVLRAYFVQG 60

Query: 9   FYL 1
           FY+
Sbjct: 61  FYI 63


>ref|XP_002282050.1| PREDICTED: protein RER1B [Vitis vinifera]
           gi|302142515|emb|CBI19718.3| unnamed protein product
           [Vitis vinifera]
          Length = 194

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 34/63 (53%), Positives = 43/63 (68%)
 Frame = -2

Query: 189 MEGVGDDVSSATAPFAKYRSDLSRMFQHYLDKLTPLASERWIGTGVLGTFFLLRVYLVQG 10
           ME V  D +S  AP AK+++D SR FQHYLDK TP    RW+GT  +   ++LRVY VQG
Sbjct: 1   MERVEGDAASTVAPLAKWKNDFSRAFQHYLDKSTPHPVHRWLGTLAVAAIYVLRVYYVQG 60

Query: 9   FYL 1
           FY+
Sbjct: 61  FYI 63


>emb|CBI17492.3| unnamed protein product [Vitis vinifera]
          Length = 244

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 35/67 (52%), Positives = 46/67 (68%)
 Frame = -2

Query: 201 VLLAMEGVGDDVSSATAPFAKYRSDLSRMFQHYLDKLTPLASERWIGTGVLGTFFLLRVY 22
           + L ME  G D + A AP AK++SD SR FQ+YLD+  P  +ERW+GT V  + + LRVY
Sbjct: 47  ISLHMEENGGDFALAAAPLAKWKSDFSRAFQYYLDRSAPHIAERWLGTLVAASIYFLRVY 106

Query: 21  LVQGFYL 1
            VQGFY+
Sbjct: 107 YVQGFYV 113


Top