BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025604
         (403 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containi...   178   5e-43
ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containi...   174   5e-42
ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   166   2e-39
ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containi...   166   2e-39
emb|CBI31859.3| unnamed protein product [Vitis vinifera]              164   7e-39

>ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  178 bits (451), Expect = 5e-43
 Identities = 83/133 (62%), Positives = 108/133 (81%)
 Frame = +3

Query: 3   SRKVFDGIPARDLVSWNSLICGYSQNNQFREVLSLFQAMQVENVKADAVTMVKVVLASTH 182
           ++K+FDG+  RDLVSWN+LICGYSQ N+++EVL LF AM   N+KADAVTMVK++LA +H
Sbjct: 170 AQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSH 229

Query: 183 LGDRQFADYVFHYIQTNNVEMDVYLGNTLIDLYGRRGSVEFAQSVFYQMSDKNIVSWNAM 362
           LGD +FAD +  YI+ NN+E+DVYLGNTLID+YGRR   E AQ VF +M ++NIVSWNA+
Sbjct: 230 LGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNAL 289

Query: 363 ITSYAKAGNLDSA 401
           +  +AK GNL +A
Sbjct: 290 VMGHAKVGNLTAA 302



 Score =  125 bits (313), Expect = 5e-27
 Identities = 61/133 (45%), Positives = 87/133 (65%)
 Frame = +3

Query: 3   SRKVFDGIPARDLVSWNSLICGYSQNNQFREVLSLFQAMQVENVKADAVTMVKVVLASTH 182
           +RK+FD +P RD++SW S+I GYSQ +QF + + LFQ M    VK D VT+  V+ A  H
Sbjct: 302 ARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAH 361

Query: 183 LGDRQFADYVFHYIQTNNVEMDVYLGNTLIDLYGRRGSVEFAQSVFYQMSDKNIVSWNAM 362
           LG       V HYI+ + V+ D+Y+GN+LID+Y + G VE A  VF++M DK+ VSW ++
Sbjct: 362 LGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSV 421

Query: 363 ITSYAKAGNLDSA 401
           I+  A  G  +SA
Sbjct: 422 ISGLAVNGFANSA 434



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 34/123 (27%), Positives = 63/123 (51%)
 Frame = +3

Query: 12  VFDGIPARDLVSWNSLICGYSQNNQFREVLSLFQAMQVENVKADAVTMVKVVLASTHLGD 191
           VF+ I    LV WN +I G SQ++   E + ++  M  + +  + +T++ +  A   + D
Sbjct: 72  VFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSD 131

Query: 192 RQFADYVFHYIQTNNVEMDVYLGNTLIDLYGRRGSVEFAQSVFYQMSDKNIVSWNAMITS 371
                 +  +      E  +++ N LI +Y   G + FAQ +F  M D+++VSWN +I  
Sbjct: 132 IVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICG 191

Query: 372 YAK 380
           Y++
Sbjct: 192 YSQ 194


>ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 566

 Score =  174 bits (442), Expect = 5e-42
 Identities = 87/133 (65%), Positives = 104/133 (78%)
 Frame = +3

Query: 3   SRKVFDGIPARDLVSWNSLICGYSQNNQFREVLSLFQAMQVENVKADAVTMVKVVLASTH 182
           ++KVFD +P RDLVSWNSL+CGY Q  +FREVL +F+AM+V  VK DAVTMVKVVLA T 
Sbjct: 131 AQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTS 190

Query: 183 LGDRQFADYVFHYIQTNNVEMDVYLGNTLIDLYGRRGSVEFAQSVFYQMSDKNIVSWNAM 362
           LG+   AD +  YI+ NNVE+DVYLGNTLID+YGRRG V  A+ VF QM  +N+VSWNAM
Sbjct: 191 LGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAM 250

Query: 363 ITSYAKAGNLDSA 401
           I  Y KAGNL +A
Sbjct: 251 IMGYGKAGNLVAA 263



 Score =  109 bits (272), Expect = 3e-22
 Identities = 55/133 (41%), Positives = 79/133 (59%)
 Frame = +3

Query: 3   SRKVFDGIPARDLVSWNSLICGYSQNNQFREVLSLFQAMQVENVKADAVTMVKVVLASTH 182
           +R++FD +  RD++SW ++I  YSQ  QF E L LF+ M    VK D +T+  V+ A  H
Sbjct: 263 ARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVASVLSACAH 322

Query: 183 LGDRQFADYVFHYIQTNNVEMDVYLGNTLIDLYGRRGSVEFAQSVFYQMSDKNIVSWNAM 362
            G     +    YIQ  +V+ D+Y+GN LID+Y + G VE A  VF +M  K+ VSW ++
Sbjct: 323 TGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMRKKDSVSWTSI 382

Query: 363 ITSYAKAGNLDSA 401
           I+  A  G  DSA
Sbjct: 383 ISGLAVNGFADSA 395



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 32/126 (25%), Positives = 64/126 (50%)
 Frame = +3

Query: 3   SRKVFDGIPARDLVSWNSLICGYSQNNQFREVLSLFQAMQVENVKADAVTMVKVVLASTH 182
           +  +F  I    L  WN +I G+S ++Q  E + ++  M  + +  + +T + +  A   
Sbjct: 30  AHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQGLLGNNLTYLFLFKACAR 89

Query: 183 LGDRQFADYVFHYIQTNNVEMDVYLGNTLIDLYGRRGSVEFAQSVFYQMSDKNIVSWNAM 362
           + D      +   +     E  +Y+ N LI++YG  G +  AQ VF +M ++++VSWN++
Sbjct: 90  VPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNSL 149

Query: 363 ITSYAK 380
           +  Y +
Sbjct: 150 VCGYGQ 155


>ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 552

 Score =  166 bits (420), Expect = 2e-39
 Identities = 78/133 (58%), Positives = 103/133 (77%)
 Frame = +3

Query: 3   SRKVFDGIPARDLVSWNSLICGYSQNNQFREVLSLFQAMQVENVKADAVTMVKVVLASTH 182
           ++KVFDG+  RD+VSWNS+ICGY Q N+F++VL LF+ MQ  NV+AD+VTM+K + A+  
Sbjct: 126 AQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCF 185

Query: 183 LGDRQFADYVFHYIQTNNVEMDVYLGNTLIDLYGRRGSVEFAQSVFYQMSDKNIVSWNAM 362
           L + +  DY+  YI  + V +D+YLGNTLID+YGRRG ++FA  VFYQM +KNIVSWNAM
Sbjct: 186 LSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAM 245

Query: 363 ITSYAKAGNLDSA 401
           I  YAK GNL +A
Sbjct: 246 IMGYAKVGNLVAA 258



 Score =  107 bits (268), Expect = 8e-22
 Identities = 53/133 (39%), Positives = 83/133 (62%)
 Frame = +3

Query: 3   SRKVFDGIPARDLVSWNSLICGYSQNNQFREVLSLFQAMQVENVKADAVTMVKVVLASTH 182
           ++K+F+ +P+RD++SW S+I GYS   Q  E + LFQ M V  VK D +T+   + A  H
Sbjct: 258 AKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAH 317

Query: 183 LGDRQFADYVFHYIQTNNVEMDVYLGNTLIDLYGRRGSVEFAQSVFYQMSDKNIVSWNAM 362
           LG     + V  YI+ ++++ DV++GN+LID+Y + G VE A  VF  M  ++ VSW ++
Sbjct: 318 LGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSI 377

Query: 363 ITSYAKAGNLDSA 401
           I+  A  G  +SA
Sbjct: 378 ISGLAVNGFAESA 390


>ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 593

 Score =  166 bits (420), Expect = 2e-39
 Identities = 78/133 (58%), Positives = 103/133 (77%)
 Frame = +3

Query: 3   SRKVFDGIPARDLVSWNSLICGYSQNNQFREVLSLFQAMQVENVKADAVTMVKVVLASTH 182
           ++KVFDG+  RD+VSWNS+ICGY Q N+F++VL LF+ MQ  NV+AD+VTM+K + A+  
Sbjct: 167 AQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCF 226

Query: 183 LGDRQFADYVFHYIQTNNVEMDVYLGNTLIDLYGRRGSVEFAQSVFYQMSDKNIVSWNAM 362
           L + +  DY+  YI  + V +D+YLGNTLID+YGRRG ++FA  VFYQM +KNIVSWNAM
Sbjct: 227 LSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAM 286

Query: 363 ITSYAKAGNLDSA 401
           I  YAK GNL +A
Sbjct: 287 IMGYAKVGNLVAA 299



 Score =  107 bits (268), Expect = 8e-22
 Identities = 53/133 (39%), Positives = 83/133 (62%)
 Frame = +3

Query: 3   SRKVFDGIPARDLVSWNSLICGYSQNNQFREVLSLFQAMQVENVKADAVTMVKVVLASTH 182
           ++K+F+ +P+RD++SW S+I GYS   Q  E + LFQ M V  VK D +T+   + A  H
Sbjct: 299 AKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAH 358

Query: 183 LGDRQFADYVFHYIQTNNVEMDVYLGNTLIDLYGRRGSVEFAQSVFYQMSDKNIVSWNAM 362
           LG     + V  YI+ ++++ DV++GN+LID+Y + G VE A  VF  M  ++ VSW ++
Sbjct: 359 LGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSI 418

Query: 363 ITSYAKAGNLDSA 401
           I+  A  G  +SA
Sbjct: 419 ISGLAVNGFAESA 431


>emb|CBI31859.3| unnamed protein product [Vitis vinifera]
          Length = 514

 Score =  164 bits (415), Expect = 7e-39
 Identities = 75/133 (56%), Positives = 104/133 (78%)
 Frame = +3

Query: 3   SRKVFDGIPARDLVSWNSLICGYSQNNQFREVLSLFQAMQVENVKADAVTMVKVVLASTH 182
           ++K+FDG+  RDLVSWN+LICGYSQ N+++EVL LF AM   N+KADAVTMVK++LA +H
Sbjct: 78  AQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSH 137

Query: 183 LGDRQFADYVFHYIQTNNVEMDVYLGNTLIDLYGRRGSVEFAQSVFYQMSDKNIVSWNAM 362
           LGD +FAD +  YI+ NN+E+DVYLGNTLID+YGR G++  A+ +F  M  ++++SW +M
Sbjct: 138 LGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSM 197

Query: 363 ITSYAKAGNLDSA 401
           IT Y++A     A
Sbjct: 198 ITGYSQASQFSDA 210



 Score =  125 bits (313), Expect = 5e-27
 Identities = 61/133 (45%), Positives = 87/133 (65%)
 Frame = +3

Query: 3   SRKVFDGIPARDLVSWNSLICGYSQNNQFREVLSLFQAMQVENVKADAVTMVKVVLASTH 182
           +RK+FD +P RD++SW S+I GYSQ +QF + + LFQ M    VK D VT+  V+ A  H
Sbjct: 179 ARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAH 238

Query: 183 LGDRQFADYVFHYIQTNNVEMDVYLGNTLIDLYGRRGSVEFAQSVFYQMSDKNIVSWNAM 362
           LG       V HYI+ + V+ D+Y+GN+LID+Y + G VE A  VF++M DK+ VSW ++
Sbjct: 239 LGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSV 298

Query: 363 ITSYAKAGNLDSA 401
           I+  A  G  +SA
Sbjct: 299 ISGLAVNGFANSA 311