BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025561
         (648 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat...   156   3e-36
ref|NP_178323.3| tetratricopeptide repeat-containing protein [Ar...   148   7e-34
ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat...   141   1e-31
ref|XP_002518803.1| pentatricopeptide repeat-containing protein,...   136   3e-30
ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...   127   1e-27

>ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  156 bits (395), Expect = 3e-36
 Identities = 83/164 (50%), Positives = 109/164 (66%)
 Frame = +3

Query: 156 PTTTTVFIWFNRLLFLFRYPYSTHVHFDNFDERLNNKEWVRRIAKNECWEEFRGSGLFDS 335
           P+  + FIW +  + L R+P+ ++ HF NFD    +K+ VR I + + W++FR   LFDS
Sbjct: 37  PSLVSPFIWLSCFICLIRFPFVSNRHFHNFD--CFDKDSVREIVREQRWDDFRIVSLFDS 94

Query: 336 VLAPIRVSRLLVELKDEAVLALSFFRWVGKEKGFCYTIECYCILVHILFRARMYFDAQEV 515
            LAPI  SR+LVEL  +A LAL FF W     GF +T E YCILVHILF AR Y DA  V
Sbjct: 95  ALAPIWASRVLVELCQDARLALRFFEWAKGRIGFQHTSEAYCILVHILFCARFYSDANAV 154

Query: 516 LKKMISSRQVLSNGLNVFDVLWLTKDFCHSGYGVFDALFGVLIE 647
           LK++I  R+VL +  +VFD+LW T++ C  G+GVFDALF  LIE
Sbjct: 155 LKELICLRRVLPS-WDVFDLLWATRNVCVPGFGVFDALFSALIE 197


>ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|218546751|sp|P0C894.1|PP143_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At2g02150 gi|330250459|gb|AEC05553.1|
           tetratricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 761

 Score =  148 bits (374), Expect = 7e-34
 Identities = 72/158 (45%), Positives = 102/158 (64%)
 Frame = +3

Query: 174 FIWFNRLLFLFRYPYSTHVHFDNFDERLNNKEWVRRIAKNECWEEFRGSGLFDSVLAPIR 353
           F+WF   L + RYP+ T      + E  + ++W+R++  N+ W++     LFD  LAPI 
Sbjct: 52  FVWFTSFLCIIRYPFVTKSGTSTYSEDFD-RDWIRKVVHNDLWDDPGLEKLFDLTLAPIW 110

Query: 354 VSRLLVELKDEAVLALSFFRWVGKEKGFCYTIECYCILVHILFRARMYFDAQEVLKKMIS 533
           V R+LVELK++  LA  FF+W     GF +++E YCI+ HILF ARMY+DA  VLK+M+ 
Sbjct: 111 VPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVL 170

Query: 534 SRQVLSNGLNVFDVLWLTKDFCHSGYGVFDALFGVLIE 647
           S+       +VFDVLW T++ C  G+GVFDALF VLI+
Sbjct: 171 SKA----DCDVFDVLWSTRNVCVPGFGVFDALFSVLID 204


>ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  141 bits (355), Expect = 1e-31
 Identities = 78/209 (37%), Positives = 127/209 (60%), Gaps = 10/209 (4%)
 Frame = +3

Query: 51  MYHLFRNFHTSSRQVSFLLSAQYPTSCALIKFKTLPTTTTV--------FIWFNRLLFLF 206
           ++H+ R    S R +S   ++ +P S +   F    + T++        F WF   L +F
Sbjct: 26  LFHVSRR--ASFRVISLSSNSSHPDSLSFNVFNPSSSLTSINAYCISRPFFWFTSFLCIF 83

Query: 207 RYPYSTHVHFDNFDERLNNKEWVRRIAKNECWEEFRGSGLFDSVLAPIRVSRLLVELKDE 386
           R P+ ++ + +N  + L+    +R+I + + W + +   LFDS LAPI VS++L+ L+++
Sbjct: 84  RLPFVSYSNANNSFQYLDIGS-LRKIIQQDLWNDPKIVVLFDSALAPIWVSKILLGLRED 142

Query: 387 AVLALSFFRWVGKEKGFCYTIECYCILVHILFRARMYFDAQEVLKKMI-SSRQVLSNGL- 560
             LAL FF+W G + GF +T E YCI+VH++FRARMY DA + +K++I +SR  +   + 
Sbjct: 143 PKLALKFFKWAGSQVGFRHTTESYCIIVHLVFRARMYTDAHDTVKEVIMNSRMDMGFPVC 202

Query: 561 NVFDVLWLTKDFCHSGYGVFDALFGVLIE 647
           N+FD+LW T++ C SG GVFD LF V +E
Sbjct: 203 NIFDMLWSTRNICVSGSGVFDVLFSVFVE 231


>ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542184|gb|EEF43728.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 775

 Score =  136 bits (343), Expect = 3e-30
 Identities = 75/151 (49%), Positives = 100/151 (66%)
 Frame = +3

Query: 195 LFLFRYPYSTHVHFDNFDERLNNKEWVRRIAKNECWEEFRGSGLFDSVLAPIRVSRLLVE 374
           L + R+P+ T     +F  +L+ K  + +I + + W + +     DS L PI VSR+LVE
Sbjct: 49  LCILRFPFITQ---SSFLGQLD-KASIIKIIQQDQWNDPKFVRFIDSSLGPIWVSRVLVE 104

Query: 375 LKDEAVLALSFFRWVGKEKGFCYTIECYCILVHILFRARMYFDAQEVLKKMISSRQVLSN 554
           LK +  LAL FFRW   + GFC T E YC+LVHILF ARMYFDA   LK++ISSR++L  
Sbjct: 105 LKQDPKLALKFFRWAKTKFGFCLTTESYCLLVHILFYARMYFDANFFLKELISSRRILP- 163

Query: 555 GLNVFDVLWLTKDFCHSGYGVFDALFGVLIE 647
           G +VF+VLW T++ C  G+GVFDALF V IE
Sbjct: 164 GFDVFEVLWSTRNVCVPGFGVFDALFSVFIE 194


>ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  127 bits (320), Expect = 1e-27
 Identities = 66/153 (43%), Positives = 104/153 (67%), Gaps = 2/153 (1%)
 Frame = +3

Query: 195 LFLFRYPYSTHVHFDNFDERLNNKEWVRRIAKNECWEEFRGSGLFDSVLAPIRVSRLLVE 374
           L +FR P+ ++ + +N  + L+    +R+I + + W + +   LFDS LAPI VS++L+ 
Sbjct: 21  LCIFRLPFVSYSNANNSFQYLDIGS-LRKIIQQDLWNDPKIVVLFDSALAPIWVSKILLG 79

Query: 375 LKDEAVLALSFFRWVGKEKGFCYTIECYCILVHILFRARMYFDAQEVLKKMI-SSRQVLS 551
           L+++  LAL FF+W G + GF +T E YCI+VH++FRARMY DA + +K++I +SR  + 
Sbjct: 80  LREDPKLALKFFKWAGSQVGFRHTTESYCIIVHLVFRARMYTDAHDTVKEVIMNSRMDMG 139

Query: 552 NGL-NVFDVLWLTKDFCHSGYGVFDALFGVLIE 647
             + N+FD+LW T++ C SG GVFD LF V +E
Sbjct: 140 FPVCNIFDMLWSTRNICVSGSGVFDVLFSVFVE 172