BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025516
         (845 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276142.2| PREDICTED: pentatricopeptide repeat-containi...   297   2e-78
emb|CAN82291.1| hypothetical protein VITISV_021279 [Vitis vinifera]   296   4e-78
ref|XP_002326026.1| predicted protein [Populus trichocarpa] gi|2...   278   1e-72
ref|XP_002525134.1| pentatricopeptide repeat-containing protein,...   278   1e-72
ref|XP_003526239.1| PREDICTED: pentatricopeptide repeat-containi...   272   8e-71

>ref|XP_002276142.2| PREDICTED: pentatricopeptide repeat-containing protein At3g58590-like
            [Vitis vinifera]
          Length = 921

 Score =  297 bits (761), Expect = 2e-78
 Identities = 150/277 (54%), Positives = 196/277 (70%)
 Frame = +2

Query: 14   VKDMVSWSIIIGTFAKSIYPGKALDLFLTMPLQGFSQEQSTFASVISSCAGMQAIKYGEL 193
            V+D+VSW+ +IG  AKS  P K L+LFL M L G    ++TF SVI+SC  +Q + +GE 
Sbjct: 317  VRDVVSWNTMIGALAKSERPSKVLELFLKMSLDGVLPNETTFVSVINSCTNLQILVFGEY 376

Query: 194  IHAKAVKKNFQSDVFVGSALVDCYAKCNCLEQADLLFSELQSTNVVSWNALIAGHSNEDS 373
            IHAK ++   +S+VFVGSALVD YAKC+ LE A   F E+   NVV WNALI G+SN+  
Sbjct: 377  IHAKVIRNKIESNVFVGSALVDFYAKCDNLESAHCCFDEIDEKNVVCWNALILGYSNK-C 435

Query: 374  HTPFYLLRQMICADYHPNEYTFSAVLKSSSTQELEQLHCLILKKGYHQHEYVSSSLVASY 553
             +   LL++M+   Y PNE++FSA LKSS   EL+QLHCLI++ GY Q+EYVSS+L+ SY
Sbjct: 436  FSSVSLLKRMLQLGYCPNEFSFSAALKSSLVFELQQLHCLIMRMGYQQNEYVSSALITSY 495

Query: 554  HINGLLSHALSFATDSTQSLTTVSSNILAGIHNRSGQYQETQKLLNQIDEFDIVSWNTLI 733
              NG++S AL F   S + L    SN +AG++N+ GQY  TQ L + ++E DIVSWN LI
Sbjct: 496  AKNGIISDALIFDAASNKPLLVGPSNAIAGVYNKIGQYHRTQDLFSLLEEPDIVSWNILI 555

Query: 734  AACARSGDYRKAFELFKGMQSVQTLPDNYTLVSLLSI 844
            AACAR+GDY++ FELFK MQ  Q  PDNYT+VSLLS+
Sbjct: 556  AACARNGDYKEVFELFKHMQMAQIYPDNYTVVSLLSV 592



 Score = 97.1 bits (240), Expect = 5e-18
 Identities = 80/281 (28%), Positives = 135/281 (48%), Gaps = 6/281 (2%)
 Frame = +2

Query: 17  KDMVSWSIIIGTFAKSIYPGKALDLFLTMPLQGFSQEQSTFASVISSCAGMQAIKYGELI 196
           +++VS++ IIG ++++    +A +LF  M   GF   Q TFA ++S CA ++ +  G  +
Sbjct: 117 RNVVSYNTIIGGYSRNGSVEEAWNLFSEMRRYGFEPTQHTFAGLLS-CASLK-LSQGFQL 174

Query: 197 HAKAVKKN-FQSDVFVGSALVDCYAKCNCLEQADLLFSELQSTNVVSWNALIAGHSNED- 370
            A+ VK   F +D + G+AL+  + +  C+++    F E+   N+V+WN +I+   N   
Sbjct: 175 QAQMVKSGLFHADPYAGTALLSLFGRNGCIDEVVCAFEEMPQKNLVTWNTVISLFGNYGF 234

Query: 371 SHTPFYLLRQMICADYHPNEYTFSAVLKS-SSTQEL---EQLHCLILKKGYHQHEYVSSS 538
           S    +L R+++      +E +F  VL   +S Q+L   EQ+H L++K G+     V +S
Sbjct: 235 SEESMFLFRELMRTGAGLSECSFMGVLSGFASEQDLELGEQVHDLLIKNGFDCEVSVLNS 294

Query: 539 LVASYHINGLLSHALSFATDSTQSLTTVSSNILAGIHNRSGQYQETQKLLNQIDEFDIVS 718
           L+  Y                       S   LA            +K+       D+VS
Sbjct: 295 LINMY--------------------VKCSCICLA------------EKMFELGCVRDVVS 322

Query: 719 WNTLIAACARSGDYRKAFELFKGMQSVQTLPDNYTLVSLLS 841
           WNT+I A A+S    K  ELF  M     LP+  T VS+++
Sbjct: 323 WNTMIGALAKSERPSKVLELFLKMSLDGVLPNETTFVSVIN 363



 Score = 88.6 bits (218), Expect = 2e-15
 Identities = 67/284 (23%), Positives = 123/284 (43%), Gaps = 5/284 (1%)
 Frame = +2

Query: 2   EQIPVKDMVSWSIIIGTFAKSIYPGKALDLFLTMPLQGFSQEQSTFASVISSCAGMQAIK 181
           E++P K++V+W+ +I  F    +  +++ LF  +   G    + +F  V+S  A  Q ++
Sbjct: 212 EEMPQKNLVTWNTVISLFGNYGFSEESMFLFRELMRTGAGLSECSFMGVLSGFASEQDLE 271

Query: 182 YGELIHAKAVKKNFQSDVFVGSALVDCYAKCNCLEQADLLFSELQSTNVVSWNALI-AGH 358
            GE +H   +K  F  +V V ++L++ Y KC+C+  A+ +F      +VVSWN +I A  
Sbjct: 272 LGEQVHDLLIKNGFDCEVSVLNSLINMYVKCSCICLAEKMFELGCVRDVVSWNTMIGALA 331

Query: 359 SNEDSHTPFYLLRQMICADYHPNEYTFSAVLKSSSTQEL----EQLHCLILKKGYHQHEY 526
            +E       L  +M      PNE TF +V+ S +  ++    E +H  +++     + +
Sbjct: 332 KSERPSKVLELFLKMSLDGVLPNETTFVSVINSCTNLQILVFGEYIHAKVIRNKIESNVF 391

Query: 527 VSSSLVASYHINGLLSHALSFATDSTQSLTTVSSNILAGIHNRSGQYQETQKLLNQIDEF 706
           V S+LV  Y                                 +    +      ++IDE 
Sbjct: 392 VGSALVDFY--------------------------------AKCDNLESAHCCFDEIDEK 419

Query: 707 DIVSWNTLIAACARSGDYRKAFELFKGMQSVQTLPDNYTLVSLL 838
           ++V WN LI     S     +  L K M  +   P+ ++  + L
Sbjct: 420 NVVCWNALI--LGYSNKCFSSVSLLKRMLQLGYCPNEFSFSAAL 461



 Score = 76.3 bits (186), Expect = 8e-12
 Identities = 72/313 (23%), Positives = 132/313 (42%), Gaps = 33/313 (10%)
 Frame = +2

Query: 2    EQIPVKDMVSWSIIIGTFAKSIYPGKALDLFLTMPLQGFSQEQSTFASVISSCAGMQAIK 181
            ++I  K++V W+ +I  ++   +   ++ L   M   G+   + +F++ + S    +   
Sbjct: 414  DEIDEKNVVCWNALILGYSNKCF--SSVSLLKRMLQLGYCPNEFSFSAALKSSLVFEL-- 469

Query: 182  YGELIHAKAVKKNFQSDVFVGSALVDCYAKCNCLEQADL--------------------- 298
              + +H   ++  +Q + +V SAL+  YAK   +  A +                     
Sbjct: 470  --QQLHCLIMRMGYQQNEYVSSALITSYAKNGIISDALIFDAASNKPLLVGPSNAIAGVY 527

Query: 299  -----------LFSELQSTNVVSWNALIAGHS-NEDSHTPFYLLRQMICADYHPNEYTFS 442
                       LFS L+  ++VSWN LIA  + N D    F L + M  A  +P+ YT  
Sbjct: 528  NKIGQYHRTQDLFSLLEEPDIVSWNILIAACARNGDYKEVFELFKHMQMAQIYPDNYTVV 587

Query: 443  AVLKSSSTQELEQLHCLILKKGYHQHEYVSSSLVASYHINGLLSHALSFATDSTQSLTTV 622
            ++L   +     +L  L L                     G   H     TD  +   T 
Sbjct: 588  SLLSVCT-----KLCNLAL---------------------GSSIHGFIIKTDF-KFCDTF 620

Query: 623  SSNILAGIHNRSGQYQETQKLLNQIDEFDIVSWNTLIAACARSGDYRKAFELFKGMQSVQ 802
              N+L  ++ + G  + + K+ N+I E +I++W  LI+A   +G   +A +LF+ M+S+ 
Sbjct: 621  VFNVLIDMYGKCGCIESSLKIFNKIIERNIITWTALISALGVNGYANEALKLFREMESLG 680

Query: 803  TLPDNYTLVSLLS 841
              PD   LV++ S
Sbjct: 681  FKPDGVALVAVFS 693



 Score = 61.2 bits (147), Expect = 3e-07
 Identities = 48/207 (23%), Positives = 92/207 (44%), Gaps = 6/207 (2%)
 Frame = +2

Query: 95  LTMPLQGFSQEQSTFASVISSCAGMQAIKYGELIHAKAVK--KNFQSDVFVGSALVDCYA 268
           L   L G   +Q     ++ +C     +K  + +HA  V    N    +F+ + L+  Y 
Sbjct: 40  LPQSLHGQFMQQQRLLLLLQACKKAPTLKETKPLHALTVTMASNSTQPIFLYNNLISLYV 99

Query: 269 KCNCLEQADLLFSELQSTNVVSWNALIAGHSNEDS-HTPFYLLRQMICADYHPNEYTFSA 445
               L  A  +F E+   NVVS+N +I G+S   S    + L  +M    + P ++TF+ 
Sbjct: 100 LQGELSTARKVFGEMTQRNVVSYNTIIGGYSRNGSVEEAWNLFSEMRRYGFEPTQHTFAG 159

Query: 446 VLKSSSTQELE--QLHCLILKKG-YHQHEYVSSSLVASYHINGLLSHALSFATDSTQSLT 616
           +L  +S +  +  QL   ++K G +H   Y  ++L++ +  NG +   +  A +      
Sbjct: 160 LLSCASLKLSQGFQLQAQMVKSGLFHADPYAGTALLSLFGRNGCIDEVVC-AFEEMPQKN 218

Query: 617 TVSSNILAGIHNRSGQYQETQKLLNQI 697
            V+ N +  +    G  +E+  L  ++
Sbjct: 219 LVTWNTVISLFGNYGFSEESMFLFREL 245


>emb|CAN82291.1| hypothetical protein VITISV_021279 [Vitis vinifera]
          Length = 954

 Score =  296 bits (758), Expect = 4e-78
 Identities = 150/277 (54%), Positives = 195/277 (70%)
 Frame = +2

Query: 14   VKDMVSWSIIIGTFAKSIYPGKALDLFLTMPLQGFSQEQSTFASVISSCAGMQAIKYGEL 193
            V+D+VSW+ +IG  AKS  P K L+LFL M L G    ++TF SVI+SC  +Q + +GE 
Sbjct: 317  VRDVVSWNTMIGALAKSERPSKVLELFLKMSLDGVLPNETTFVSVINSCTNLQILVFGEY 376

Query: 194  IHAKAVKKNFQSDVFVGSALVDCYAKCNCLEQADLLFSELQSTNVVSWNALIAGHSNEDS 373
            IHAK ++   +S+VFVGSALVD YAKC+ LE A   F E+   NVV WNALI G+SN+  
Sbjct: 377  IHAKVIRNKIESNVFVGSALVDFYAKCDNLESAHCCFDEIDEKNVVCWNALILGYSNK-C 435

Query: 374  HTPFYLLRQMICADYHPNEYTFSAVLKSSSTQELEQLHCLILKKGYHQHEYVSSSLVASY 553
             +   LL++M+   Y PNE +FSA LKSS   EL+QLHCLI++ GY Q+EYVSS+L+ SY
Sbjct: 436  FSSVSLLKRMLQLGYXPNEXSFSAALKSSLVFELQQLHCLIMRMGYQQNEYVSSALITSY 495

Query: 554  HINGLLSHALSFATDSTQSLTTVSSNILAGIHNRSGQYQETQKLLNQIDEFDIVSWNTLI 733
              NG++S AL F   S + L    SN +AG++N+ GQY  TQ L + ++E DIVSWN LI
Sbjct: 496  AKNGIISDALIFDAASNKPLLVGPSNAIAGVYNKIGQYHXTQDLFSLLEEPDIVSWNILI 555

Query: 734  AACARSGDYRKAFELFKGMQSVQTLPDNYTLVSLLSI 844
            AACAR+GDY++ FELFK MQ  Q  PDNYT+VSLLS+
Sbjct: 556  AACARNGDYKEVFELFKHMQMAQIYPDNYTVVSLLSV 592



 Score = 95.5 bits (236), Expect = 1e-17
 Identities = 79/281 (28%), Positives = 135/281 (48%), Gaps = 6/281 (2%)
 Frame = +2

Query: 17  KDMVSWSIIIGTFAKSIYPGKALDLFLTMPLQGFSQEQSTFASVISSCAGMQAIKYGELI 196
           +++VS++ IIG ++++    +A +LF  +   GF   Q TFA ++S CA ++ +  G  +
Sbjct: 117 RNVVSYNTIIGGYSRNGSVEEAWNLFSELRRYGFEPTQHTFAGLLS-CASLK-LSQGFQL 174

Query: 197 HAKAVKKN-FQSDVFVGSALVDCYAKCNCLEQADLLFSELQSTNVVSWNALIAGHSNED- 370
            A+ VK   F +D + G+AL+  + +  C+++    F E+   N+V+WN +I+   N   
Sbjct: 175 QAQMVKSGLFHADPYAGTALLSLFRRNGCIDEVVCAFEEMPLKNLVTWNTVISLFGNYGF 234

Query: 371 SHTPFYLLRQMICADYHPNEYTFSAVLKS-SSTQEL---EQLHCLILKKGYHQHEYVSSS 538
           S    +L R+++      +E +F  VL   +S Q+L   EQ+H L++K G+     V +S
Sbjct: 235 SEESMFLFRELMRTGAGLSECSFMGVLSGFASEQDLELGEQVHDLLIKNGFDXEVSVLNS 294

Query: 539 LVASYHINGLLSHALSFATDSTQSLTTVSSNILAGIHNRSGQYQETQKLLNQIDEFDIVS 718
           L+  Y                       S   LA            +K+       D+VS
Sbjct: 295 LINMY--------------------VKCSCIXLA------------EKMFELGCVRDVVS 322

Query: 719 WNTLIAACARSGDYRKAFELFKGMQSVQTLPDNYTLVSLLS 841
           WNT+I A A+S    K  ELF  M     LP+  T VS+++
Sbjct: 323 WNTMIGALAKSERPSKVLELFLKMSLDGVLPNETTFVSVIN 363



 Score = 90.5 bits (223), Expect = 4e-16
 Identities = 53/189 (28%), Positives = 98/189 (51%), Gaps = 5/189 (2%)
 Frame = +2

Query: 2   EQIPVKDMVSWSIIIGTFAKSIYPGKALDLFLTMPLQGFSQEQSTFASVISSCAGMQAIK 181
           E++P+K++V+W+ +I  F    +  +++ LF  +   G    + +F  V+S  A  Q ++
Sbjct: 212 EEMPLKNLVTWNTVISLFGNYGFSEESMFLFRELMRTGAGLSECSFMGVLSGFASEQDLE 271

Query: 182 YGELIHAKAVKKNFQSDVFVGSALVDCYAKCNCLEQADLLFSELQSTNVVSWNALI-AGH 358
            GE +H   +K  F  +V V ++L++ Y KC+C+  A+ +F      +VVSWN +I A  
Sbjct: 272 LGEQVHDLLIKNGFDXEVSVLNSLINMYVKCSCIXLAEKMFELGCVRDVVSWNTMIGALA 331

Query: 359 SNEDSHTPFYLLRQMICADYHPNEYTFSAVLKSSSTQEL----EQLHCLILKKGYHQHEY 526
            +E       L  +M      PNE TF +V+ S +  ++    E +H  +++     + +
Sbjct: 332 KSERPSKVLELFLKMSLDGVLPNETTFVSVINSCTNLQILVFGEYIHAKVIRNKIESNVF 391

Query: 527 VSSSLVASY 553
           V S+LV  Y
Sbjct: 392 VGSALVDFY 400



 Score = 74.3 bits (181), Expect = 3e-11
 Identities = 71/313 (22%), Positives = 131/313 (41%), Gaps = 33/313 (10%)
 Frame = +2

Query: 2    EQIPVKDMVSWSIIIGTFAKSIYPGKALDLFLTMPLQGFSQEQSTFASVISSCAGMQAIK 181
            ++I  K++V W+ +I  ++   +   ++ L   M   G+   + +F++ + S    +   
Sbjct: 414  DEIDEKNVVCWNALILGYSNKCF--SSVSLLKRMLQLGYXPNEXSFSAALKSSLVFEL-- 469

Query: 182  YGELIHAKAVKKNFQSDVFVGSALVDCYAKCNCLEQADL--------------------- 298
              + +H   ++  +Q + +V SAL+  YAK   +  A +                     
Sbjct: 470  --QQLHCLIMRMGYQQNEYVSSALITSYAKNGIISDALIFDAASNKPLLVGPSNAIAGVY 527

Query: 299  -----------LFSELQSTNVVSWNALIAGHS-NEDSHTPFYLLRQMICADYHPNEYTFS 442
                       LFS L+  ++VSWN LIA  + N D    F L + M  A  +P+ YT  
Sbjct: 528  NKIGQYHXTQDLFSLLEEPDIVSWNILIAACARNGDYKEVFELFKHMQMAQIYPDNYTVV 587

Query: 443  AVLKSSSTQELEQLHCLILKKGYHQHEYVSSSLVASYHINGLLSHALSFATDSTQSLTTV 622
            ++L   +     +L  L L                     G   H     TD  +   T 
Sbjct: 588  SLLSVCT-----KLCNLAL---------------------GSSIHGFIIKTDF-KFCDTF 620

Query: 623  SSNILAGIHNRSGQYQETQKLLNQIDEFDIVSWNTLIAACARSGDYRKAFELFKGMQSVQ 802
              N+L  ++ + G  + + K+ N+I   +I++W  LI+A   +G   +A +LF+ M+S+ 
Sbjct: 621  VFNVLIDMYGKCGCIESSLKIFNKIIXRNIITWTALISALGVNGYANEALKLFREMESLG 680

Query: 803  TLPDNYTLVSLLS 841
              PD   LV++ S
Sbjct: 681  FKPDGVALVAVFS 693



 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 46/203 (22%), Positives = 91/203 (44%), Gaps = 6/203 (2%)
 Frame = +2

Query: 107 LQGFSQEQSTFASVISSCAGMQAIKYGELIHAKAVK--KNFQSDVFVGSALVDCYAKCNC 280
           L G   +Q     ++ +C     +K  + +HA  V    N    +F+ + L+  Y     
Sbjct: 44  LHGQFMQQQRLLLLLQACKTAPTLKETKPLHALTVTMASNSTQPIFLYNNLISLYVLQGE 103

Query: 281 LEQADLLFSELQSTNVVSWNALIAGHSNEDS-HTPFYLLRQMICADYHPNEYTFSAVLKS 457
           L  A  +F E+   NVVS+N +I G+S   S    + L  ++    + P ++TF+ +L  
Sbjct: 104 LSTAREVFGEMTQRNVVSYNTIIGGYSRNGSVEEAWNLFSELRRYGFEPTQHTFAGLLSC 163

Query: 458 SSTQELE--QLHCLILKKG-YHQHEYVSSSLVASYHINGLLSHALSFATDSTQSLTTVSS 628
           +S +  +  QL   ++K G +H   Y  ++L++ +  NG +   +  A +       V+ 
Sbjct: 164 ASLKLSQGFQLQAQMVKSGLFHADPYAGTALLSLFRRNGCIDEVVC-AFEEMPLKNLVTW 222

Query: 629 NILAGIHNRSGQYQETQKLLNQI 697
           N +  +    G  +E+  L  ++
Sbjct: 223 NTVISLFGNYGFSEESMFLFREL 245


>ref|XP_002326026.1| predicted protein [Populus trichocarpa] gi|222862901|gb|EEF00408.1|
            predicted protein [Populus trichocarpa]
          Length = 737

 Score =  278 bits (711), Expect = 1e-72
 Identities = 141/281 (50%), Positives = 190/281 (67%)
 Frame = +2

Query: 2    EQIPVKDMVSWSIIIGTFAKSIYPGKALDLFLTMPLQGFSQEQSTFASVISSCAGMQAIK 181
            E++  +D+V+W+ II  F+KS  PGKAL++FL M   G    Q+TF SVI+SC  +    
Sbjct: 273  EEVDGRDVVTWNTIISAFSKSKNPGKALEVFLKMSEDGIMPNQTTFVSVINSCTSLLVPM 332

Query: 182  YGELIHAKAVKKNFQSDVFVGSALVDCYAKCNCLEQADLLFSELQSTNVVSWNALIAGHS 361
             GE +H K VK   ++DV++GSALVD YAKC  L+ A   F E+   NVVSWN+LI G++
Sbjct: 333  CGEYVHGKIVKTALETDVYLGSALVDYYAKCGKLDNAHYCFREIHQKNVVSWNSLILGYA 392

Query: 362  NEDSHTPFYLLRQMICADYHPNEYTFSAVLKSSSTQELEQLHCLILKKGYHQHEYVSSSL 541
            N+ S     LL +M+   + PNE++FSAVLKSS   EL+Q+H L ++ GY  +EYV +SL
Sbjct: 393  NKCSFASVSLLLEMLKLGFRPNEFSFSAVLKSSLVLELKQIHSLTIRLGYENNEYVLTSL 452

Query: 542  VASYHINGLLSHALSFATDSTQSLTTVSSNILAGIHNRSGQYQETQKLLNQIDEFDIVSW 721
            + SY  NGL++ AL F   S   L  V +N +AGI+NRSGQY ET K L+Q++E D VSW
Sbjct: 453  ITSYGRNGLITDALIFVKASETLLAVVPANSIAGIYNRSGQYFETLKFLSQLEEPDTVSW 512

Query: 722  NTLIAACARSGDYRKAFELFKGMQSVQTLPDNYTLVSLLSI 844
            N +IAACAR+G+Y + FELFK M+  Q LPDNYT  SLL +
Sbjct: 513  NIVIAACARNGNYNEVFELFKHMRVAQMLPDNYTYTSLLCV 553



 Score =  102 bits (254), Expect = 1e-19
 Identities = 82/289 (28%), Positives = 142/289 (49%), Gaps = 9/289 (3%)
 Frame = +2

Query: 2   EQIPVKDMVSWSIIIGTFAKSIYPGKALDLFLTMPLQGFSQEQSTFASVISSCAGMQAIK 181
           + +P ++ VS++ II  F+K  Y  +A   F  M   GF     T + ++S CA M  + 
Sbjct: 72  DNMPHRNKVSYNSIISCFSKYGYLEEAWRTFCEMIDCGFRPNNFTLSGLLS-CASMD-VG 129

Query: 182 YGELIHAKAVKKN-FQSDVFVGSALVDCYAKCNCLEQADLLFSELQSTNVVSWNALIA-- 352
            G ++ A A+K   F SDVFVG+AL+  + +C  L++A  +F ++   ++V+WN++I+  
Sbjct: 130 RGIMLQALAIKNGLFCSDVFVGTALLGLFGRCGWLDEAFHVFEDMPDKSLVTWNSMISLL 189

Query: 353 GHSN--EDSHTPFYLLRQMICADYHPNEYTFSAVLKSSSTQE-LE---QLHCLILKKGYH 514
           GH    ED      L R+++  +   ++ +F  VL     +E LE   Q+H L++K G  
Sbjct: 190 GHHGFVEDC---VVLFRKLVRKEGSLSKCSFEGVLSGLVCEEDLEFGGQIHGLVIKSGLD 246

Query: 515 QHEYVSSSLVASYHINGLLSHALSFATDSTQSLTTVSSNILAGIHNRSGQYQETQKLLNQ 694
               VS+SL+  Y                                 R     + +KL  +
Sbjct: 247 CEVLVSNSLINMY--------------------------------ARRSSMSQVEKLFEE 274

Query: 695 IDEFDIVSWNTLIAACARSGDYRKAFELFKGMQSVQTLPDNYTLVSLLS 841
           +D  D+V+WNT+I+A ++S +  KA E+F  M     +P+  T VS+++
Sbjct: 275 VDGRDVVTWNTIISAFSKSKNPGKALEVFLKMSEDGIMPNQTTFVSVIN 323



 Score = 76.3 bits (186), Expect = 8e-12
 Identities = 53/223 (23%), Positives = 106/223 (47%), Gaps = 5/223 (2%)
 Frame = +2

Query: 2   EQIPVKDMVSWSIIIGTFAKSIYPGKALDLFLTMPLQGFSQEQSTFASVISSCAGMQAIK 181
           E +P K +V+W+ +I       +    + LF  +  +  S  + +F  V+S     + ++
Sbjct: 172 EDMPDKSLVTWNSMISLLGHHGFVEDCVVLFRKLVRKEGSLSKCSFEGVLSGLVCEEDLE 231

Query: 182 YGELIHAKAVKKNFQSDVFVGSALVDCYAKCNCLEQADLLFSELQSTNVVSWNALIAGHS 361
           +G  IH   +K     +V V ++L++ YA+ + + Q + LF E+   +VV+WN +I+  S
Sbjct: 232 FGGQIHGLVIKSGLDCEVLVSNSLINMYARRSSMSQVEKLFEEVDGRDVVTWNTIISAFS 291

Query: 362 -NEDSHTPFYLLRQMICADYHPNEYTFSAVLKSSSTQEL----EQLHCLILKKGYHQHEY 526
            +++      +  +M      PN+ TF +V+ S ++  +    E +H  I+K       Y
Sbjct: 292 KSKNPGKALEVFLKMSEDGIMPNQTTFVSVINSCTSLLVPMCGEYVHGKIVKTALETDVY 351

Query: 527 VSSSLVASYHINGLLSHALSFATDSTQSLTTVSSNILAGIHNR 655
           + S+LV  Y   G L +A     +  Q      ++++ G  N+
Sbjct: 352 LGSALVDYYAKCGKLDNAHYCFREIHQKNVVSWNSLILGYANK 394



 Score = 69.3 bits (168), Expect = 1e-09
 Identities = 66/314 (21%), Positives = 136/314 (43%), Gaps = 35/314 (11%)
 Frame = +2

Query: 5    QIPVKDMVSW-SIIIGTFAKSIYPGKALDLFLTMPLQGFSQEQSTFASVISSCAGMQAIK 181
            +I  K++VSW S+I+G   K  +   ++ L L M   GF   + +F++V+ S   ++   
Sbjct: 375  EIHQKNVVSWNSLILGYANKCSFA--SVSLLLEMLKLGFRPNEFSFSAVLKSSLVLEL-- 430

Query: 182  YGELIHAKAVKKNFQSDVFVGSALVDCYAKCNCLEQADLLF------------------- 304
              + IH+  ++  ++++ +V ++L+  Y +   +  A L+F                   
Sbjct: 431  --KQIHSLTIRLGYENNEYVLTSLITSYGRNGLITDA-LIFVKASETLLAVVPANSIAGI 487

Query: 305  --------------SELQSTNVVSWNALIAGHSNEDSHTP-FYLLRQMICADYHPNEYTF 439
                          S+L+  + VSWN +IA  +   ++   F L + M  A   P+ YT+
Sbjct: 488  YNRSGQYFETLKFLSQLEEPDTVSWNIVIAACARNGNYNEVFELFKHMRVAQMLPDNYTY 547

Query: 440  SAVLKSSSTQELEQLHCLILKKGYHQHEYVSSSLVASYHINGLLSHALSFATDSTQSLTT 619
            +++L  SS                        +L     I+GLL         +      
Sbjct: 548  TSLLCVSSKV---------------------CNLALGSSIHGLLIKT------NFSYFDI 580

Query: 620  VSSNILAGIHNRSGQYQETQKLLNQIDEFDIVSWNTLIAACARSGDYRKAFELFKGMQSV 799
            V  N+L  ++ + G  + + K+ + + E ++++W  LI+A   +G  ++A E F  M+ +
Sbjct: 581  VVRNVLIDMYGKCGNLESSAKIFDSMTERNLITWTALISALGINGCAQEALERFNDMEFL 640

Query: 800  QTLPDNYTLVSLLS 841
             + PD    +++L+
Sbjct: 641  GSRPDKVAFIAVLT 654


>ref|XP_002525134.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223535593|gb|EEF37261.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 792

 Score =  278 bits (710), Expect = 1e-72
 Identities = 146/280 (52%), Positives = 189/280 (67%)
 Frame = +2

Query: 2    EQIPVKDMVSWSIIIGTFAKSIYPGKALDLFLTMPLQGFSQEQSTFASVISSCAGMQAIK 181
            E+   KD+V+W+ +I   AKS  P KAL+LF  MP       Q TFAS+ISSCA +Q   
Sbjct: 274  EEAACKDIVTWNTMIVALAKSEKPIKALELFFKMPRDAIRPNQITFASLISSCANLQIPM 333

Query: 182  YGELIHAKAVKKNFQSDVFVGSALVDCYAKCNCLEQADLLFSELQSTNVVSWNALIAGHS 361
            Y E IHAK +   F +DV+VGSALVD YAKC+ L+ A   F ++   NVVSWN+LI G +
Sbjct: 334  YAEFIHAKVIMHAFDTDVYVGSALVDYYAKCDKLDDARCCFVKIHEKNVVSWNSLILGCA 393

Query: 362  NEDSHTPFYLLRQMICADYHPNEYTFSAVLKSSSTQELEQLHCLILKKGYHQHEYVSSSL 541
            N+  +    LL +M+   Y PNE++FSAVL SSS  EL+QLHCLI++ GY  ++YV SSL
Sbjct: 394  NKCPYAAISLLVEMLQCGYQPNEFSFSAVLISSSILELQQLHCLIIRMGYDNNDYVLSSL 453

Query: 542  VASYHINGLLSHALSFATDSTQSLTTVSSNILAGIHNRSGQYQETQKLLNQIDEFDIVSW 721
            + SY  NGL+S AL F   S   L  V SN +AGI+N++G Y +T +LL+Q++E D VSW
Sbjct: 454  ITSYGRNGLISDALVFLAASETPLAAVPSNNVAGIYNKAGHYYKTLELLSQLEEPDNVSW 513

Query: 722  NTLIAACARSGDYRKAFELFKGMQSVQTLPDNYTLVSLLS 841
            N  IAACAR+G+Y++ FELFK M   Q  PDNYT VSLLS
Sbjct: 514  NIAIAACARNGNYKEVFELFKQMLVAQIHPDNYTYVSLLS 553



 Score = 82.0 bits (201), Expect = 2e-13
 Identities = 66/285 (23%), Positives = 120/285 (42%), Gaps = 6/285 (2%)
 Frame = +2

Query: 2   EQIPVKDMVSWSIIIGTFAKSIYPGKALDLFLTMPLQ-GFSQEQSTFASVISSCAGMQAI 178
           E +P+K +V+W+ II  F +  Y    +  F  +  + G    + +F  V+S     + +
Sbjct: 172 EDLPIKSLVTWNSIICLFGQHGYVEDCIIYFCELHREIGCCLSECSFVGVLSGLVCGKYL 231

Query: 179 KYGELIHAKAVKKNFQSDVFVGSALVDCYAKCNCLEQADLLFSELQSTNVVSWNALI-AG 355
           ++GE IH+   K  F   V V ++++  Y KC  L  A+  F E    ++V+WN +I A 
Sbjct: 232 EFGEQIHSLVTKTGFDYTVSVVNSVISVYVKCATLHLAEKKFEEAACKDIVTWNTMIVAL 291

Query: 356 HSNEDSHTPFYLLRQMICADYHPNEYTFSAVLKSSSTQEL----EQLHCLILKKGYHQHE 523
             +E       L  +M      PN+ TF++++ S +  ++    E +H  ++   +    
Sbjct: 292 AKSEKPIKALELFFKMPRDAIRPNQITFASLISSCANLQIPMYAEFIHAKVIMHAFDTDV 351

Query: 524 YVSSSLVASYHINGLLSHALSFATDSTQSLTTVSSNILAGIHNRSGQYQETQKLLNQIDE 703
           YV S+LV  Y                                 +  +  + +    +I E
Sbjct: 352 YVGSALVDYY--------------------------------AKCDKLDDARCCFVKIHE 379

Query: 704 FDIVSWNTLIAACARSGDYRKAFELFKGMQSVQTLPDNYTLVSLL 838
            ++VSWN+LI  CA    Y  A  L   M      P+ ++  ++L
Sbjct: 380 KNVVSWNSLILGCANKCPY-AAISLLVEMLQCGYQPNEFSFSAVL 423



 Score = 79.7 bits (195), Expect = 7e-13
 Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 22/204 (10%)
 Frame = +2

Query: 5    QIPVKDMVSWSIIIGTFAKSIYPGKALDLFLTMPLQGFSQEQSTFASVISSCAGMQAIKY 184
            Q+   D VSW+I I   A++    +  +LF  M +     +  T+ S++SS + +  +  
Sbjct: 504  QLEEPDNVSWNIAIAACARNGNYKEVFELFKQMLVAQIHPDNYTYVSLLSSSSQICDLAL 563

Query: 185  GELIHAKAVKKNFQS-DVFVGSALVDCYAKCNCLEQADLLFSELQSTNVVSWNALIAGHS 361
            G  IH   +K NF S D FV + L+D Y KC CL  +  +F+ ++  N+++W ALI+   
Sbjct: 564  GSSIHGFLIKNNFSSCDTFVCNVLLDMYGKCGCLRSSVKIFNSMRDRNLITWTALISALG 623

Query: 362  -NEDSHTPFYLLRQMICADYHPNEYTFSAVL-------------------KSSSTQ-ELE 478
             N  +H      + M      P++  F AVL                   KS   + E++
Sbjct: 624  INSCAHEALERFKDMEHQGLRPDKVAFIAVLTACRHGALVGEGIELFKKMKSYGLEPEMD 683

Query: 479  QLHCLILKKGYHQHEYVSSSLVAS 550
              HCL+     H H   +  +++S
Sbjct: 684  HYHCLVDLFSRHGHVKEAEKVISS 707



 Score = 75.5 bits (184), Expect = 1e-11
 Identities = 70/313 (22%), Positives = 135/313 (43%), Gaps = 34/313 (10%)
 Frame = +2

Query: 5    QIPVKDMVSW-SIIIGTFAKSIYPGKALDLFLTMPLQGFSQEQSTFASVISSCAGMQAIK 181
            +I  K++VSW S+I+G   K  Y   A+ L + M   G+   + +F++V+ S + ++   
Sbjct: 376  KIHEKNVVSWNSLILGCANKCPYA--AISLLVEMLQCGYQPNEFSFSAVLISSSILEL-- 431

Query: 182  YGELIHAKAVKKNFQSDVFVGSALVDCYAKCNCLEQADL--------------------- 298
              + +H   ++  + ++ +V S+L+  Y +   +  A +                     
Sbjct: 432  --QQLHCLIIRMGYDNNDYVLSSLITSYGRNGLISDALVFLAASETPLAAVPSNNVAGIY 489

Query: 299  -----------LFSELQSTNVVSWNALIAGHSNEDSHTP-FYLLRQMICADYHPNEYTFS 442
                       L S+L+  + VSWN  IA  +   ++   F L +QM+ A  HP+ YT+ 
Sbjct: 490  NKAGHYYKTLELLSQLEEPDNVSWNIAIAACARNGNYKEVFELFKQMLVAQIHPDNYTYV 549

Query: 443  AVLKSSSTQELEQLHCLILKKGYHQHEYVSSSLVASYHINGLLSHALSFATDSTQSLTTV 622
            ++L SSS     Q+  L L    H                G L        ++  S  T 
Sbjct: 550  SLLSSSS-----QICDLALGSSIH----------------GFL------IKNNFSSCDTF 582

Query: 623  SSNILAGIHNRSGQYQETQKLLNQIDEFDIVSWNTLIAACARSGDYRKAFELFKGMQSVQ 802
              N+L  ++ + G  + + K+ N + + ++++W  LI+A   +    +A E FK M+   
Sbjct: 583  VCNVLLDMYGKCGCLRSSVKIFNSMRDRNLITWTALISALGINSCAHEALERFKDMEHQG 642

Query: 803  TLPDNYTLVSLLS 841
              PD    +++L+
Sbjct: 643  LRPDKVAFIAVLT 655



 Score = 75.1 bits (183), Expect = 2e-11
 Identities = 78/290 (26%), Positives = 133/290 (45%), Gaps = 10/290 (3%)
 Frame = +2

Query: 2   EQIPVKDMVSWSIIIGTFAKSIYPGKALDLFLTMPLQGFSQEQSTFASVISSCAGMQAIK 181
           + +P + + S++ II ++ K  Y  +AL +F  M   GF     T + ++S C+ M  + 
Sbjct: 72  DNMPQRSIASYNSIITSYCKYGYLEEALGVFSRMRDCGFRPNNFTLSGLLS-CSKMD-LS 129

Query: 182 YGELIHAKAVKKN-FQSDVFVGSALVDCYAKCNCLEQADLLFSELQSTNVVSWNALI--- 349
            G  + A A+K   F  D FVG+AL++ + +   L +A  +F +L   ++V+WN++I   
Sbjct: 130 IGLQLQALAMKNGLFYIDAFVGTALLNVFGRWGWLNEALHVFEDLPIKSLVTWNSIICLF 189

Query: 350 AGHSNEDSHTPFY--LLRQMICADYHPNEYTFSAVLKSSSTQEL----EQLHCLILKKGY 511
             H   +    ++  L R++ C     +E +F  VL      +     EQ+H L+ K G+
Sbjct: 190 GQHGYVEDCIIYFCELHREIGCC---LSECSFVGVLSGLVCGKYLEFGEQIHSLVTKTGF 246

Query: 512 HQHEYVSSSLVASYHINGLLSHALSFATDSTQSLTTVSSNILAGIHNRSGQYQETQKLLN 691
              +Y  S       +N ++S  +  AT                +H    +++E      
Sbjct: 247 ---DYTVSV------VNSVISVYVKCAT----------------LHLAEKKFEEAACK-- 279

Query: 692 QIDEFDIVSWNTLIAACARSGDYRKAFELFKGMQSVQTLPDNYTLVSLLS 841
                DIV+WNT+I A A+S    KA ELF  M      P+  T  SL+S
Sbjct: 280 -----DIVTWNTMIVALAKSEKPIKALELFFKMPRDAIRPNQITFASLIS 324


>ref|XP_003526239.1| PREDICTED: pentatricopeptide repeat-containing protein At3g58590-like
            [Glycine max]
          Length = 732

 Score =  272 bits (695), Expect = 8e-71
 Identities = 139/281 (49%), Positives = 188/281 (66%)
 Frame = +2

Query: 2    EQIPVKDMVSWSIIIGTFAKSIYPGKALDLFLTMPLQGFSQEQSTFASVISSCAGMQAIK 181
            EQ+PV+++VSW+ +I    KS  P  ALDLFL M  +G    Q+TF +VI SC  ++   
Sbjct: 274  EQVPVENVVSWNTVIDALVKSERPMMALDLFLNMARRGLMPSQATFVAVIHSCTSLRNSV 333

Query: 182  YGELIHAKAVKKNFQSDVFVGSALVDCYAKCNCLEQADLLFSELQSTNVVSWNALIAGHS 361
             GE +HAK ++  F+SDV VG+ALVD Y+KC+    A   F +++  NVVSWNALI G+S
Sbjct: 334  CGESVHAKIIRSGFESDVIVGTALVDFYSKCDKFISAHKCFDQIEEKNVVSWNALITGYS 393

Query: 362  NEDSHTPFYLLRQMICADYHPNEYTFSAVLKSSSTQELEQLHCLILKKGYHQHEYVSSSL 541
            N  S T   LL++M+   Y PNE++FSAVLKSSS   L QLH LI++ GY  +EYV SSL
Sbjct: 394  NICSSTSILLLQKMLQLGYSPNEFSFSAVLKSSSMSNLHQLHGLIIRSGYESNEYVLSSL 453

Query: 542  VASYHINGLLSHALSFATDSTQSLTTVSSNILAGIHNRSGQYQETQKLLNQIDEFDIVSW 721
            V +Y  NGL++ ALSF  +    L  V SNI+AGI+NR+  Y ET KLL+ +++ D VSW
Sbjct: 454  VMAYTRNGLINEALSFVEEFNNPLPVVPSNIIAGIYNRTSLYHETIKLLSLLEKPDAVSW 513

Query: 722  NTLIAACARSGDYRKAFELFKGMQSVQTLPDNYTLVSLLSI 844
            N +I+ACARS  Y + F LFK M S    PD+YT +S++S+
Sbjct: 514  NIVISACARSNSYDEVFALFKHMHSACIHPDSYTFMSIISV 554



 Score = 82.4 bits (202), Expect = 1e-13
 Identities = 60/250 (24%), Positives = 109/250 (43%), Gaps = 6/250 (2%)
 Frame = +2

Query: 2   EQIPVKDMVSWSIIIGTFAKSIYPGKALDLFLTMPLQGFSQEQSTFASVISSCAGMQA-I 178
           E +P K +V+W+ ++   A++ +  +   LF  +   G S  + +  +V+S     +  +
Sbjct: 172 EDMPQKSLVTWNSMVSLLARNGFVEECKILFRDLVGTGISLSEGSVVAVLSGLVDSEEDL 231

Query: 179 KYGELIHAKAVKKNFQSDVFVGSALVDCYAKCNCLEQADLLFSELQSTNVVSWNALI-AG 355
           +YGE IH   VK  F  ++   ++L+  Y +C  +   + LF ++   NVVSWN +I A 
Sbjct: 232 EYGEQIHGLMVKCGFGCEITAANSLISVYVRCKAMFAVERLFEQVPVENVVSWNTVIDAL 291

Query: 356 HSNEDSHTPFYLLRQMICADYHPNEYTFSAVLKSSSTQEL----EQLHCLILKKGYHQHE 523
             +E       L   M      P++ TF AV+ S ++       E +H  I++ G+    
Sbjct: 292 VKSERPMMALDLFLNMARRGLMPSQATFVAVIHSCTSLRNSVCGESVHAKIIRSGFESDV 351

Query: 524 YVSSSLVASYHINGLLSHALSFATDSTQSLTTVSSNILAGIHNRSGQYQETQKLLNQIDE 703
            V ++LV  Y                                ++  ++    K  +QI+E
Sbjct: 352 IVGTALVDFY--------------------------------SKCDKFISAHKCFDQIEE 379

Query: 704 FDIVSWNTLI 733
            ++VSWN LI
Sbjct: 380 KNVVSWNALI 389



 Score = 74.3 bits (181), Expect = 3e-11
 Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 2/148 (1%)
 Frame = +2

Query: 20  DMVSWSIIIGTFAKSIYPGKALDLFLTMPLQGFSQEQSTFASVISSCAGMQAIKYGELIH 199
           D VSW+I+I   A+S    +   LF  M       +  TF S+IS C  +  +  G  +H
Sbjct: 509 DAVSWNIVISACARSNSYDEVFALFKHMHSACIHPDSYTFMSIISVCTKLCLLNLGSSLH 568

Query: 200 AKAVKKNFQS-DVFVGSALVDCYAKCNCLEQADLLFSELQSTNVVSWNALIAGHS-NEDS 373
              +K N  + D F+G+ L+D Y KC  ++ +  +F E+   N+++W ALI     N  +
Sbjct: 569 GLIIKTNLSNYDTFLGNVLIDMYGKCGSIDSSVKVFEEIMYKNIITWTALITALGLNGFA 628

Query: 374 HTPFYLLRQMICADYHPNEYTFSAVLKS 457
           H      + +      P+     AVL S
Sbjct: 629 HEAVMRFQNLELMGLKPDALALRAVLSS 656



 Score = 65.5 bits (158), Expect = 1e-08
 Identities = 62/286 (21%), Positives = 124/286 (43%), Gaps = 7/286 (2%)
 Frame = +2

Query: 2   EQIPVKDMVSWSIIIGTFAKSIYPGKALDLFLTMPLQGFSQEQSTFASVISSCAGMQAIK 181
           + +P + +VS++ +I  + +      A +L   M   GF+  Q T   ++S C  +   +
Sbjct: 72  DALPHRTVVSYNTLITAYCRRGNVDDAWNLLCHMRGSGFAPTQYTLTGLLS-CELLNHSR 130

Query: 182 YGELIHAKAVKKNF-QSDVFVGSALVDCYAKCNCLEQADLLFSELQSTNVVSWNALIAGH 358
            G  + A +++     +D FVG+AL+  + +  C ++  L F ++   ++V+WN++++  
Sbjct: 131 -GVQLQALSIRNGLLDADAFVGTALLGLFGRLGCWDELFLAFEDMPQKSLVTWNSMVSLL 189

Query: 359 S-NEDSHTPFYLLRQMICADYHPNEYTFSAVLKS--SSTQEL---EQLHCLILKKGYHQH 520
           + N        L R ++      +E +  AVL     S ++L   EQ+H L++K G+   
Sbjct: 190 ARNGFVEECKILFRDLVGTGISLSEGSVVAVLSGLVDSEEDLEYGEQIHGLMVKCGF--- 246

Query: 521 EYVSSSLVASYHINGLLSHALSFATDSTQSLTTVSSNILAGIHNRSGQYQETQKLLNQID 700
                                             ++N L  ++ R       ++L  Q+ 
Sbjct: 247 -----------------------------GCEITAANSLISVYVRCKAMFAVERLFEQVP 277

Query: 701 EFDIVSWNTLIAACARSGDYRKAFELFKGMQSVQTLPDNYTLVSLL 838
             ++VSWNT+I A  +S     A +LF  M     +P   T V+++
Sbjct: 278 VENVVSWNTVIDALVKSERPMMALDLFLNMARRGLMPSQATFVAVI 323