BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025511
         (781 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280003.2| PREDICTED: pentatricopeptide repeat-containi...   312   6e-83
emb|CBI26347.3| unnamed protein product [Vitis vinifera]              308   9e-82
ref|XP_002517032.1| pentatricopeptide repeat-containing protein,...   281   9e-74
ref|XP_004166077.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   273   2e-71
ref|XP_004146417.1| PREDICTED: pentatricopeptide repeat-containi...   273   2e-71

>ref|XP_002280003.2| PREDICTED: pentatricopeptide repeat-containing protein At3g23020
           [Vitis vinifera]
          Length = 881

 Score =  312 bits (799), Expect = 6e-83
 Identities = 160/252 (63%), Positives = 185/252 (73%), Gaps = 15/252 (5%)
 Frame = +3

Query: 60  ENPNGANKRISKVYRKIQ-TRRSDDVVRPGLNGSTSVEKPIQDQ-------DKKVRKTCG 215
           E+PNG  KR S+V R+    RRS    +PGLN    V+ P + Q        + + K  G
Sbjct: 47  ESPNGGVKRFSRVCRQTHHDRRSGASQKPGLNQHGFVKDPERKQRRHSGGDGRTINKRGG 106

Query: 216 A--FDSSE-----RKKETKALLKWGSYGGCLPLILRALDTIKDLDEALKPWEKTLNNKER 374
              F S +      K  T    KW SYGGC+P ILRAL+T+KDLDEAL PWE++L+NKER
Sbjct: 107 VVGFRSGDANDLVEKVSTNCSTKWLSYGGCIPSILRALETVKDLDEALSPWEESLSNKER 166

Query: 375 SIILKEQIIWERALEIFNWFKRKGCYELNVIHYNIMIRILGKARKWDHVENLWNEMQAHG 554
           SIILKEQ  WERALEIF W K+KGCYELNVIHYNIM+RILGKARKW HVE+LW+EM + G
Sbjct: 167 SIILKEQSCWERALEIFEWLKKKGCYELNVIHYNIMLRILGKARKWHHVESLWDEMMSRG 226

Query: 555 TAPTNSTYGTLIDVYSKGGLREEALLWLERMNKQGMEPDEVTMGIVVQTYKKSGEFEKAE 734
             P NSTYGTLIDVYSKGGL EEAL WL+RMNKQGMEPDEVTMG+VVQTYKK+GEF+KAE
Sbjct: 227 ITPVNSTYGTLIDVYSKGGLTEEALHWLDRMNKQGMEPDEVTMGVVVQTYKKAGEFKKAE 286

Query: 735 NFFKKWSSGKPI 770
            FFK WS GK +
Sbjct: 287 QFFKNWSLGKTL 298



 Score = 57.4 bits (137), Expect = 3e-06
 Identities = 27/99 (27%), Positives = 54/99 (54%)
 Frame = +3

Query: 453 ELNVIHYNIMIRILGKARKWDHVENLWNEMQAHGTAPTNSTYGTLIDVYSKGGLREEALL 632
           +L+V+ +N+MI+  G + +++    L + M+ HG  P   +Y +LI + +   L  +A  
Sbjct: 530 KLSVLEFNVMIKAYGISNRYEKACQLIDSMENHGVLPDKFSYNSLIQILASADLPHKAKF 589

Query: 633 WLERMNKQGMEPDEVTMGIVVQTYKKSGEFEKAENFFKK 749
           +L +M +  +  D +    V+ ++ K G+ E AE  FK+
Sbjct: 590 YLMKMQETQLVSDCIPYCAVISSFIKLGQLEMAEGLFKE 628


>emb|CBI26347.3| unnamed protein product [Vitis vinifera]
          Length = 862

 Score =  308 bits (789), Expect = 9e-82
 Identities = 158/247 (63%), Positives = 182/247 (73%), Gaps = 15/247 (6%)
 Frame = +3

Query: 60  ENPNGANKRISKVYRKIQ-TRRSDDVVRPGLNGSTSVEKPIQDQ-------DKKVRKTCG 215
           E+PNG  KR S+V R+    RRS    +PGLN    V+ P + Q        + + K  G
Sbjct: 47  ESPNGGVKRFSRVCRQTHHDRRSGASQKPGLNQHGFVKDPERKQRRHSGGDGRTINKRGG 106

Query: 216 A--FDSSE-----RKKETKALLKWGSYGGCLPLILRALDTIKDLDEALKPWEKTLNNKER 374
              F S +      K  T    KW SYGGC+P ILRAL+T+KDLDEAL PWE++L+NKER
Sbjct: 107 VVGFRSGDANDLVEKVSTNCSTKWLSYGGCIPSILRALETVKDLDEALSPWEESLSNKER 166

Query: 375 SIILKEQIIWERALEIFNWFKRKGCYELNVIHYNIMIRILGKARKWDHVENLWNEMQAHG 554
           SIILKEQ  WERALEIF W K+KGCYELNVIHYNIM+RILGKARKW HVE+LW+EM + G
Sbjct: 167 SIILKEQSCWERALEIFEWLKKKGCYELNVIHYNIMLRILGKARKWHHVESLWDEMMSRG 226

Query: 555 TAPTNSTYGTLIDVYSKGGLREEALLWLERMNKQGMEPDEVTMGIVVQTYKKSGEFEKAE 734
             P NSTYGTLIDVYSKGGL EEAL WL+RMNKQGMEPDEVTMG+VVQTYKK+GEF+KAE
Sbjct: 227 ITPVNSTYGTLIDVYSKGGLTEEALHWLDRMNKQGMEPDEVTMGVVVQTYKKAGEFKKAE 286

Query: 735 NFFKKWS 755
            FFK WS
Sbjct: 287 QFFKNWS 293



 Score = 57.4 bits (137), Expect = 3e-06
 Identities = 27/99 (27%), Positives = 54/99 (54%)
 Frame = +3

Query: 453 ELNVIHYNIMIRILGKARKWDHVENLWNEMQAHGTAPTNSTYGTLIDVYSKGGLREEALL 632
           +L+V+ +N+MI+  G + +++    L + M+ HG  P   +Y +LI + +   L  +A  
Sbjct: 511 KLSVLEFNVMIKAYGISNRYEKACQLIDSMENHGVLPDKFSYNSLIQILASADLPHKAKF 570

Query: 633 WLERMNKQGMEPDEVTMGIVVQTYKKSGEFEKAENFFKK 749
           +L +M +  +  D +    V+ ++ K G+ E AE  FK+
Sbjct: 571 YLMKMQETQLVSDCIPYCAVISSFIKLGQLEMAEGLFKE 609


>ref|XP_002517032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543667|gb|EEF45195.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 875

 Score =  281 bits (720), Expect = 9e-74
 Identities = 146/262 (55%), Positives = 178/262 (67%), Gaps = 17/262 (6%)
 Frame = +3

Query: 21  LGGVGDVNKVRRE---ENPNGANKRISKVYRKIQTRRSDDVVRPGLNGSTSVEKPIQDQD 191
           L  +  V K+R +   E  NG  K+   ++++ + + +D   + G       + P + Q 
Sbjct: 40  LENIEPVKKLREKRLLETSNGTVKKFGVIHKQSRDKANDSAHKNGFGKQALEQNPDRQQR 99

Query: 192 KKVRKTCGAFDS--------------SERKKETKALLKWGSYGGCLPLILRALDTIKDLD 329
           K  R      ++              S  K  TK   KW +YGG +P IL AL+TIK+LD
Sbjct: 100 KMGRNNYKTMNNKSLGVKFHRINGNDSVDKVRTKCSTKWVNYGGSIPSILEALETIKNLD 159

Query: 330 EALKPWEKTLNNKERSIILKEQIIWERALEIFNWFKRKGCYELNVIHYNIMIRILGKARK 509
           EALKPWE TL+NKERSIILKEQ  WERA+EIF WFK +GCYELNVIHYNIMIRILGKA++
Sbjct: 160 EALKPWEDTLSNKERSIILKEQCSWERAMEIFEWFKSRGCYELNVIHYNIMIRILGKAKQ 219

Query: 510 WDHVENLWNEMQAHGTAPTNSTYGTLIDVYSKGGLREEALLWLERMNKQGMEPDEVTMGI 689
           W ++E L NEM     +P NSTYGTLIDVYSKGGLRE+AL WLE+MNKQGMEPDEVTMGI
Sbjct: 220 WRYLECLCNEMSFKRISPINSTYGTLIDVYSKGGLREKALDWLEKMNKQGMEPDEVTMGI 279

Query: 690 VVQTYKKSGEFEKAENFFKKWS 755
           VVQ YKK+GEF+KAE FFKKWS
Sbjct: 280 VVQMYKKAGEFQKAEEFFKKWS 301



 Score = 62.8 bits (151), Expect = 8e-08
 Identities = 27/99 (27%), Positives = 58/99 (58%)
 Frame = +3

Query: 453 ELNVIHYNIMIRILGKARKWDHVENLWNEMQAHGTAPTNSTYGTLIDVYSKGGLREEALL 632
           +L V+ +N+MI+  G  + ++   +L++ M++HG  P   +Y +L+ + +   L ++A  
Sbjct: 535 KLTVLEFNVMIKAYGFGKNYEKACDLFDSMESHGVVPDKCSYSSLVQILASADLPDKAKH 594

Query: 633 WLERMNKQGMEPDEVTMGIVVQTYKKSGEFEKAENFFKK 749
           +L++M + G+  D V    V+ ++ K G+ E AE  +K+
Sbjct: 595 YLKKMQEAGLVSDCVQYCAVISSFVKLGKLEMAEEVYKE 633


>ref|XP_004166077.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g23020-like [Cucumis sativus]
          Length = 859

 Score =  273 bits (699), Expect = 2e-71
 Identities = 131/182 (71%), Positives = 146/182 (80%)
 Frame = +3

Query: 213 GAFDSSERKKETKALLKWGSYGGCLPLILRALDTIKDLDEALKPWEKTLNNKERSIILKE 392
           G  + S  K   K   KW SYGGC+P IL+ALD I DLDEALKPW+  LNNKERSIILKE
Sbjct: 104 GDGNGSVEKVHAKCSTKWLSYGGCIPAILQALDEISDLDEALKPWKDKLNNKERSIILKE 163

Query: 393 QIIWERALEIFNWFKRKGCYELNVIHYNIMIRILGKARKWDHVENLWNEMQAHGTAPTNS 572
           Q  WERALEIF WF   GCYE+NVIHYNI++  LGKA+KW  VE+LW EM   G  P NS
Sbjct: 164 QTSWERALEIFEWFNMAGCYEVNVIHYNIVLGTLGKAQKWRLVESLWVEMNKKGIKPINS 223

Query: 573 TYGTLIDVYSKGGLREEALLWLERMNKQGMEPDEVTMGIVVQTYKKSGEFEKAENFFKKW 752
           TYGTLIDVYSKGG +EEAL+WLERMN+QGMEPDEVTMGIVVQ YKK+GEF+KAE+FFKKW
Sbjct: 224 TYGTLIDVYSKGGFKEEALVWLERMNEQGMEPDEVTMGIVVQLYKKAGEFQKAESFFKKW 283

Query: 753 SS 758
           SS
Sbjct: 284 SS 285


>ref|XP_004146417.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g23020-like [Cucumis sativus]
          Length = 858

 Score =  273 bits (699), Expect = 2e-71
 Identities = 131/182 (71%), Positives = 146/182 (80%)
 Frame = +3

Query: 213 GAFDSSERKKETKALLKWGSYGGCLPLILRALDTIKDLDEALKPWEKTLNNKERSIILKE 392
           G  + S  K   K   KW SYGGC+P IL+ALD I DLDEALKPW+  LNNKERSIILKE
Sbjct: 103 GDGNGSVEKVHAKCSTKWLSYGGCIPAILQALDEISDLDEALKPWKDKLNNKERSIILKE 162

Query: 393 QIIWERALEIFNWFKRKGCYELNVIHYNIMIRILGKARKWDHVENLWNEMQAHGTAPTNS 572
           Q  WERALEIF WF   GCYE+NVIHYNI++  LGKA+KW  VE+LW EM   G  P NS
Sbjct: 163 QTSWERALEIFEWFNMAGCYEVNVIHYNIVLGTLGKAQKWRLVESLWVEMNKKGIKPINS 222

Query: 573 TYGTLIDVYSKGGLREEALLWLERMNKQGMEPDEVTMGIVVQTYKKSGEFEKAENFFKKW 752
           TYGTLIDVYSKGG +EEAL+WLERMN+QGMEPDEVTMGIVVQ YKK+GEF+KAE+FFKKW
Sbjct: 223 TYGTLIDVYSKGGFKEEALVWLERMNEQGMEPDEVTMGIVVQLYKKAGEFQKAESFFKKW 282

Query: 753 SS 758
           SS
Sbjct: 283 SS 284