BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025506
         (283 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containi...   113   1e-23
dbj|BAC42187.2| unknown protein [Arabidopsis thaliana]                110   9e-23
ref|NP_195903.2| pentatricopeptide repeat-containing protein [Ar...   110   9e-23
ref|XP_004167767.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   108   3e-22
ref|XP_004142106.1| PREDICTED: pentatricopeptide repeat-containi...   108   3e-22

>ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
           chloroplastic [Vitis vinifera]
           gi|297741486|emb|CBI32618.3| unnamed protein product
           [Vitis vinifera]
          Length = 842

 Score =  113 bits (283), Expect = 1e-23
 Identities = 55/94 (58%), Positives = 67/94 (71%)
 Frame = -2

Query: 282 PVKGFLKPSEIFDLCLGERDPDTAVRYASLLPHAHTWFSSIILGFGKKGDLKSALIAYET 103
           PVK  L+P +   +C+ +R+P+ AVRYA +LPHA   F +II  FGKK DL SAL A+E 
Sbjct: 176 PVKKLLEPLDFIKICVNKRNPNLAVRYACILPHAQILFCTIIHEFGKKRDLGSALTAFEA 235

Query: 102 SKSKTDSPNMYVCRTMIDVCGLCGNFFKSRYIYE 1
           SK K   PNMY  RTMIDVCGLC ++ KSRYIYE
Sbjct: 236 SKQKLIGPNMYCYRTMIDVCGLCSHYQKSRYIYE 269


>dbj|BAC42187.2| unknown protein [Arabidopsis thaliana]
          Length = 852

 Score =  110 bits (276), Expect = 9e-23
 Identities = 50/93 (53%), Positives = 63/93 (67%)
 Frame = -2

Query: 279 VKGFLKPSEIFDLCLGERDPDTAVRYASLLPHAHTWFSSIILGFGKKGDLKSALIAYETS 100
           +K  + P ++   C+   +P  A+RYA LLPH       II GFGKKGD+ S + AYE  
Sbjct: 199 IKELVDPFDVVKSCVEISNPQLAIRYACLLPHTELLLCRIIHGFGKKGDMVSVMTAYEAC 258

Query: 99  KSKTDSPNMYVCRTMIDVCGLCGNFFKSRYIYE 1
           K   D+PNMY+CRTMIDVCGLCG++ KSRYIYE
Sbjct: 259 KQILDTPNMYICRTMIDVCGLCGDYVKSRYIYE 291


>ref|NP_195903.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|332278227|sp|Q8GYL7.3|PP361_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g02830, chloroplastic; Flags: Precursor
           gi|332003140|gb|AED90523.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 852

 Score =  110 bits (276), Expect = 9e-23
 Identities = 50/93 (53%), Positives = 63/93 (67%)
 Frame = -2

Query: 279 VKGFLKPSEIFDLCLGERDPDTAVRYASLLPHAHTWFSSIILGFGKKGDLKSALIAYETS 100
           +K  + P ++   C+   +P  A+RYA LLPH       II GFGKKGD+ S + AYE  
Sbjct: 199 IKELVDPFDVVKSCVEISNPQLAIRYACLLPHTELLLCRIIHGFGKKGDMVSVMTAYEAC 258

Query: 99  KSKTDSPNMYVCRTMIDVCGLCGNFFKSRYIYE 1
           K   D+PNMY+CRTMIDVCGLCG++ KSRYIYE
Sbjct: 259 KQILDTPNMYICRTMIDVCGLCGDYVKSRYIYE 291


>ref|XP_004167767.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g02830, chloroplastic-like [Cucumis sativus]
          Length = 855

 Score =  108 bits (271), Expect = 3e-22
 Identities = 52/93 (55%), Positives = 67/93 (72%)
 Frame = -2

Query: 279 VKGFLKPSEIFDLCLGERDPDTAVRYASLLPHAHTWFSSIILGFGKKGDLKSALIAYETS 100
           V+  +KPSE+  LC+  R+P  A+RYAS+LPHA   F + I  FGKK DLKSA IAY  S
Sbjct: 193 VREMMKPSEVIKLCVDYRNPKMAIRYASILPHADILFCTTINEFGKKRDLKSAYIAYTES 252

Query: 99  KSKTDSPNMYVCRTMIDVCGLCGNFFKSRYIYE 1
           K+  +  NMY+ RT+IDVCGLCG++ KSR IY+
Sbjct: 253 KANMNGSNMYIYRTIIDVCGLCGDYKKSRNIYQ 285


>ref|XP_004142106.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  108 bits (271), Expect = 3e-22
 Identities = 52/93 (55%), Positives = 67/93 (72%)
 Frame = -2

Query: 279 VKGFLKPSEIFDLCLGERDPDTAVRYASLLPHAHTWFSSIILGFGKKGDLKSALIAYETS 100
           V+  +KPSE+  LC+  R+P  A+RYAS+LPHA   F + I  FGKK DLKSA IAY  S
Sbjct: 193 VREMMKPSEVIKLCVDYRNPKMAIRYASILPHADILFCTTINEFGKKRDLKSAYIAYTES 252

Query: 99  KSKTDSPNMYVCRTMIDVCGLCGNFFKSRYIYE 1
           K+  +  NMY+ RT+IDVCGLCG++ KSR IY+
Sbjct: 253 KANMNGSNMYIYRTIIDVCGLCGDYKKSRNIYQ 285