BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025448
         (566 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    97   2e-18
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...    94   2e-17
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    94   2e-17
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                 90   2e-16
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...    90   3e-16

>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 59/173 (34%), Positives = 89/173 (51%)
 Frame = -2

Query: 520  NDVLIFIRGREDSIVALKFILDEFSRATXXXXXXXXXXXXXXXLTQDDSTHLVQIICMQP 341
            +D+++F  G   SI     I ++F+  +               ++ +  T ++Q    + 
Sbjct: 852  DDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGISPNAKTSILQQFPFEL 911

Query: 340  ISPLIKYLGLPLVFARISTKDCLLLVEKTSTKIENSKNRFLGHAGRLQLIISVLATFHIY 161
             +  +KYLGLPL+  R++  D L LVEK   +I +  NRFL  AGRLQLI SVL++   +
Sbjct: 912  GTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNF 971

Query: 160  WAKTFILPKGVLTMISKTCVKFLWSGPEMGKKMHHSSRDNLQFPKNEGGLGIQ 2
            W   F LPK  L  I K    FLWSGP++  K    +   +   K EGGLG++
Sbjct: 972  WLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLK 1024


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score = 94.0 bits (232), Expect = 2e-17
 Identities = 51/173 (29%), Positives = 91/173 (52%)
 Frame = -2

Query: 520  NDVLIFIRGREDSIVALKFILDEFSRATXXXXXXXXXXXXXXXLTQDDSTHLVQIICMQP 341
            +D+++F  G   S+  +  I  +F+  +               ++ +    ++       
Sbjct: 960  DDIMVFSAGSAHSLEGVLAIFKDFAAFSGLNISLEKSTLFMASISSETCASILARFPFDS 1019

Query: 340  ISPLIKYLGLPLVFARISTKDCLLLVEKTSTKIENSKNRFLGHAGRLQLIISVLATFHIY 161
             S  ++YLGLPL+  R++  DCL L+EK  ++I + KNRFL +AGRLQL+ SV+++   +
Sbjct: 1020 GSLPVRYLGLPLMTKRMTLADCLPLLEKIRSRISSWKNRFLSYAGRLQLLNSVISSLTKF 1079

Query: 160  WAKTFILPKGVLTMISKTCVKFLWSGPEMGKKMHHSSRDNLQFPKNEGGLGIQ 2
            W   F LP+  +  I +    FLWSG ++       +  ++  PK+EGGLG++
Sbjct: 1080 WISAFRLPRACIREIEQISAAFLWSGTDLNPHKAKVAWHDVCKPKSEGGLGLR 1132


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 48/109 (44%), Positives = 67/109 (61%)
 Frame = -2

Query: 328  IKYLGLPLVFARISTKDCLLLVEKTSTKIENSKNRFLGHAGRLQLIISVLATFHIYWAKT 149
            ++YLGLPL+  R+ST DCL L+E+   +I +  +RFL +AGRL LI SVL +   +W   
Sbjct: 769  VRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAA 828

Query: 148  FILPKGVLTMISKTCVKFLWSGPEMGKKMHHSSRDNLQFPKNEGGLGIQ 2
            F LP+  +  + K C  FLWSG EM       S   +  PK+EGGLG++
Sbjct: 829  FRLPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLR 877


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 53/173 (30%), Positives = 90/173 (52%)
 Frame = -2

Query: 520 NDVLIFIRGREDSIVALKFILDEFSRATXXXXXXXXXXXXXXXLTQDDSTHLVQIICMQP 341
           +D+++FI G++ S+  +  I  EF+  +               +++ +  +++       
Sbjct: 278 DDLMVFIDGQQRSVEGVINIFKEFAGKSGLHISLEKSTLYLAGVSELNRNNILSAFPFAS 337

Query: 340 ISPLIKYLGLPLVFARISTKDCLLLVEKTSTKIENSKNRFLGHAGRLQLIISVLATFHIY 161
               ++YLGLPL+  +++T D   L++K  +KI +   R L +AGRL LI SV+ +   +
Sbjct: 338 GQLPVRYLGLPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYAGRLALINSVIVSLSNF 397

Query: 160 WAKTFILPKGVLTMISKTCVKFLWSGPEMGKKMHHSSRDNLQFPKNEGGLGIQ 2
           W   + LP G +  I K C  FLWSGPE+  K    +  +L   K EGGLGI+
Sbjct: 398 WMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKKAKITWTSLCKLKQEGGLGIK 450


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score = 89.7 bits (221), Expect = 3e-16
 Identities = 52/173 (30%), Positives = 85/173 (49%)
 Frame = -2

Query: 520  NDVLIFIRGREDSIVALKFILDEFSRATXXXXXXXXXXXXXXXLTQDDSTHLVQIICMQP 341
            +D+++F+ G + SI  +  +  EF+  +               ++  D    +       
Sbjct: 1002 DDLMVFVDGHQWSIEGVINVFKEFAGRSGLQISLEKSTIYLAGVSASDRVQTLSSFPFAN 1061

Query: 340  ISPLIKYLGLPLVFARISTKDCLLLVEKTSTKIENSKNRFLGHAGRLQLIISVLATFHIY 161
                ++YLGLPL+  +++T D   L+E   TKI +   R L +AGRL L+ SV+ +   +
Sbjct: 1062 GQLPVRYLGLPLLTKQMTTADYSPLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIANF 1121

Query: 160  WAKTFILPKGVLTMISKTCVKFLWSGPEMGKKMHHSSRDNLQFPKNEGGLGIQ 2
            W   + LP G +  I K C  FLWSGP +  K    +  ++  PK EGGLGI+
Sbjct: 1122 WMSAYRLPAGCIREIEKLCSAFLWSGPVLNPKKAKIAWSSICQPKKEGGLGIK 1174