BLASTX nr result
ID: Coptis23_contig00025384
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00025384
(475 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containi... 63 3e-11
emb|CBI32045.3| unnamed protein product [Vitis vinifera] 63 3e-11
ref|XP_002520167.1| pentatricopeptide repeat-containing protein,... 61 7e-11
ref|XP_002311869.1| predicted protein [Populus trichocarpa] gi|2... 64 2e-10
ref|XP_003630933.1| Tau class glutathione S-transferase [Medicag... 54 1e-08
>ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
Length = 748
Score = 62.8 bits (151), Expect(3) = 3e-11
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Frame = +1
Query: 85 ELETANNILHEMCGKDLVLNVVMCSSLIIGLWKLGNI*HTVKIMEDMETTRLRPDSTLLC 264
E++TAN +LHEMC K L LN+ +SL+ GL K GNI VK+M+DME PD+
Sbjct: 478 EVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYT 537
Query: 265 DSSFNFQQDSSLATSNQFFKGIL---LQPC*VT 354
+ + + +++ + +L LQP VT
Sbjct: 538 TLMDAYCKSREMVRAHELLRQMLDRELQPTVVT 570
Score = 25.0 bits (53), Expect(3) = 3e-11
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +2
Query: 44 TYTTLPDGLCKRG 82
TYT L DGLCK G
Sbjct: 465 TYTALADGLCKCG 477
Score = 24.6 bits (52), Expect(3) = 3e-11
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3
Query: 6 MIHMGLTPNVVT 41
M+ MGLTPN+VT
Sbjct: 454 MLQMGLTPNIVT 465
>emb|CBI32045.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 62.8 bits (151), Expect(3) = 3e-11
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Frame = +1
Query: 85 ELETANNILHEMCGKDLVLNVVMCSSLIIGLWKLGNI*HTVKIMEDMETTRLRPDSTLLC 264
E++TAN +LHEMC K L LN+ +SL+ GL K GNI VK+M+DME PD+
Sbjct: 378 EVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYT 437
Query: 265 DSSFNFQQDSSLATSNQFFKGIL---LQPC*VT 354
+ + + +++ + +L LQP VT
Sbjct: 438 TLMDAYCKSREMVRAHELLRQMLDRELQPTVVT 470
Score = 25.0 bits (53), Expect(3) = 3e-11
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +2
Query: 44 TYTTLPDGLCKRG 82
TYT L DGLCK G
Sbjct: 365 TYTALADGLCKCG 377
Score = 24.6 bits (52), Expect(3) = 3e-11
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3
Query: 6 MIHMGLTPNVVT 41
M+ MGLTPN+VT
Sbjct: 354 MLQMGLTPNIVT 365
>ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223540659|gb|EEF42222.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 604
Score = 61.2 bits (147), Expect(3) = 7e-11
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Frame = +1
Query: 85 ELETANNILHEMCGKDLVLNVVMCSSLIIGLWKLGNI*HTVKIMEDMETTRLRPDSTLLC 264
EL+TAN +LHEMC K L LN+ ++++ GL K GNI VK+ME+M+ L PD+
Sbjct: 335 ELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYT 394
Query: 265 DSSFNFQQDSSLATSNQFFKGIL---LQPC*VT 354
+ + + + + + +L LQP VT
Sbjct: 395 TLMDAYYKTGEMVKARELLREMLDRGLQPTVVT 427
Score = 25.8 bits (55), Expect(3) = 7e-11
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +2
Query: 44 TYTTLPDGLCKRG 82
TYT L DGLCK G
Sbjct: 322 TYTALADGLCKSG 334
Score = 23.9 bits (50), Expect(3) = 7e-11
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3
Query: 6 MIHMGLTPNVVT 41
M+ +GLTPNVVT
Sbjct: 311 MVQIGLTPNVVT 322
>ref|XP_002311869.1| predicted protein [Populus trichocarpa] gi|222851689|gb|EEE89236.1|
predicted protein [Populus trichocarpa]
Length = 470
Score = 63.9 bits (154), Expect(2) = 2e-10
Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Frame = +1
Query: 85 ELETANNILHEMCGKDLVLNVVMCSSLIIGLWKLGNI*HTVKIMEDMETTRLRPDSTLLC 264
+++TAN +LHEMCGK L LN+ +SL+ GL K GNI VK+ME+ME + PD+
Sbjct: 200 QVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFT 259
Query: 265 DSSFNFQQDSSLATSNQFFKGIL---LQPC*VT 354
+ + + +++ + +L LQP +T
Sbjct: 260 TLMDAYCKTGEMVKAHELLREMLDRGLQPTVIT 292
Score = 26.2 bits (56), Expect(2) = 2e-10
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 11 SYGIDP*CCHCTYTTLPDGLCKRG 82
S G++P TYTTL DG CK G
Sbjct: 143 SRGVEP--DEVTYTTLIDGYCKSG 164
>ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
gi|355524955|gb|AET05409.1| Tau class glutathione
S-transferase [Medicago truncatula]
Length = 1320
Score = 53.5 bits (127), Expect(3) = 1e-08
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Frame = +1
Query: 85 ELETANNILHEMCGKDLVLNVVMCSSLIIGLWKLGNI*HTVKIMEDMETTRLRPDSTLLC 264
E++ AN +LHEM K L NV ++++ GL K+GNI TVK+ME+M+ PD+
Sbjct: 467 EIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYT 526
Query: 265 DSSFNFQQDSSLATSNQFFKGIL---LQPC*VT 354
+ + +A +++ + +L LQP VT
Sbjct: 527 TLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVT 559
Score = 26.2 bits (56), Expect(3) = 1e-08
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +2
Query: 44 TYTTLPDGLCKRG 82
TYT L DGLCK G
Sbjct: 454 TYTALADGLCKNG 466
Score = 23.1 bits (48), Expect(3) = 1e-08
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3
Query: 6 MIHMGLTPNVVT 41
M+ GLTPNVVT
Sbjct: 443 MVQKGLTPNVVT 454