BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025373
         (506 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containi...   236   1e-60
ref|XP_003559432.1| PREDICTED: pentatricopeptide repeat-containi...   229   2e-58
ref|XP_002314678.1| predicted protein [Populus trichocarpa] gi|2...   224   7e-57
ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containi...   223   2e-56
ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containi...   223   2e-56

>ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial [Vitis vinifera]
          Length = 535

 Score =  236 bits (603), Expect = 1e-60
 Identities = 111/166 (66%), Positives = 138/166 (83%)
 Frame = +3

Query: 3   TLEEMERCGIHPCVISYTSLIEAYCHDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALG 182
           ++ EM+  G  P VISYTS++EAYC +KDFRKV+++L+EM+ KGC PNVVTYTIVMHALG
Sbjct: 279 SMAEMKEHGFCPDVISYTSIVEAYCREKDFRKVNSVLNEMEEKGCPPNVVTYTIVMHALG 338

Query: 183 KAKETYEALGIYERMKKNGCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDVT 362
           K KE  +AL +YE+MK + CVPDTSFY+SLIYI SKAGRL++A  +F++M+K G  PDV 
Sbjct: 339 KGKEISKALEVYEKMKGSSCVPDTSFYSSLIYILSKAGRLKDARDVFEDMTKQGAIPDVL 398

Query: 363 TYNTMISVACVHSQVKDALKLLQEMEERLCKPDLKTYAPLLKICCR 500
           TYNTMIS AC+HSQ +DALKLL +MEE  CKPDL TY+PLLK+CCR
Sbjct: 399 TYNTMISAACMHSQEEDALKLLLKMEESSCKPDLNTYSPLLKMCCR 444



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 38/159 (23%), Positives = 77/159 (48%)
 Frame = +3

Query: 15  MERCGIHPCVISYTSLIEAYCHDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGKAKE 194
           MER G+    ++  +L++A   +      + +  E +      N  T+ +++H   KA++
Sbjct: 214 MERFGVKKDTLAMNTLMDALVKENSVEHANDVFVEFK-DSILLNPHTFNVLIHGWCKARK 272

Query: 195 TYEALGIYERMKKNGCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDVTTYNT 374
              AL     MK++G  PD   Y S++    +    ++ + + +EM + GC P+V TY  
Sbjct: 273 MDNALKSMAEMKEHGFCPDVISYTSIVEAYCREKDFRKVNSVLNEMEEKGCPPNVVTYTI 332

Query: 375 MISVACVHSQVKDALKLLQEMEERLCKPDLKTYAPLLKI 491
           ++       ++  AL++ ++M+   C PD   Y+ L+ I
Sbjct: 333 VMHALGKGKEISKALEVYEKMKGSSCVPDTSFYSSLIYI 371



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 44/162 (27%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
 Frame = +3

Query: 9   EEMERCGIHPCVISYTSLIEAYCHDKDFRKVDA--LLDEMQFKGCSPNVVTYTIVMHALG 182
           E+M+     P    Y+SLI  Y   K  R  DA  + ++M  +G  P+V+TY  ++ A  
Sbjct: 351 EKMKGSSCVPDTSFYSSLI--YILSKAGRLKDARDVFEDMTKQGAIPDVLTYNTMISAAC 408

Query: 183 KAKETYEALGIYERMKKNGCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDVT 362
              +  +AL +  +M+++ C PD + Y+ L+ +C +  R++  S + + M K+  + +V 
Sbjct: 409 MHSQEEDALKLLLKMEESSCKPDLNTYSPLLKMCCRNNRMKVLSALLNHMFKNDISLEVG 468

Query: 363 TYNTMISVACVHSQVKDALKLLQEMEERLCKPDLKTYAPLLK 488
           TY+ ++   C   +++ A    +EM  +   P   T+  LLK
Sbjct: 469 TYSLLVHGLCKSGKLEHACLFFEEMVSKGLVPKDCTHKLLLK 510



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 43/153 (28%), Positives = 76/153 (49%)
 Frame = +3

Query: 48  SYTSLIEAYCHDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGKAKETYEALGIYERM 227
           SY S+++     K F  +  L++EM   G   ++ T T VM  L +A    +A+  +  M
Sbjct: 155 SYNSMVDILGKLKKFDLMWELVEEMDRLGGYVSLATMTKVMRRLARASRWKDAIEAFRGM 214

Query: 228 KKNGCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDVTTYNTMISVACVHSQV 407
           ++ G   DT   N+L+    K   ++ A+ +F E  K     +  T+N +I   C   ++
Sbjct: 215 ERFGVKKDTLAMNTLMDALVKENSVEHANDVFVEF-KDSILLNPHTFNVLIHGWCKARKM 273

Query: 408 KDALKLLQEMEERLCKPDLKTYAPLLKICCRRK 506
            +ALK + EM+E    PD+ +Y  +++  CR K
Sbjct: 274 DNALKSMAEMKEHGFCPDVISYTSIVEAYCREK 306


>ref|XP_003559432.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Brachypodium distachyon]
          Length = 570

 Score =  229 bits (583), Expect = 2e-58
 Identities = 104/168 (61%), Positives = 137/168 (81%)
 Frame = +3

Query: 3   TLEEMERCGIHPCVISYTSLIEAYCHDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALG 182
           T++EME  G  P VI+YTSLIEAYC +KDF+ V A+L+EM  KGC PNV+TYTIVMHALG
Sbjct: 286 TMKEMEEHGFSPSVITYTSLIEAYCMEKDFQTVYAILNEMCSKGCRPNVITYTIVMHALG 345

Query: 183 KAKETYEALGIYERMKKNGCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDVT 362
           KA  T EAL +++++K++GCVPD SFYNS+IYI  +AGRL++A+ +FDEM ++G  P V 
Sbjct: 346 KAGRTQEALDVFDKVKRDGCVPDASFYNSIIYILGRAGRLEDANSVFDEMCRTGIPPTVA 405

Query: 363 TYNTMISVACVHSQVKDALKLLQEMEERLCKPDLKTYAPLLKICCRRK 506
            +NTMIS AC HSQ ++ALK+L +MEE+ CKPD+KTY PLLK+CC+R+
Sbjct: 406 IFNTMISAACDHSQAENALKILVKMEEQSCKPDIKTYTPLLKLCCKRQ 453



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 14/161 (8%)
 Frame = +3

Query: 66  EAYCHDKD-----------FRKVD---ALLDEMQFKGCSPNVVTYTIVMHALGKAKETYE 203
           E YCH  D           F++ D    L+ +M   GC  ++ T T VM  L  A    +
Sbjct: 154 EGYCHHADLYNLMVDILGKFKQFDLLWGLIRQMDEIGCLVSLATMTKVMRRLAGANRWTD 213

Query: 204 ALGIYERMKKNGCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDVTTYNTMIS 383
           A+  + +M + G V DT   N+L+    K   ++ A  +F E+ +    PD +++NT++ 
Sbjct: 214 AIDAFNKMDQFGVVRDTKAMNALLDTLCKEKSVKRARGVFQEL-RGVVPPDESSFNTLVH 272

Query: 384 VACVHSQVKDALKLLQEMEERLCKPDLKTYAPLLKICCRRK 506
             C    + +A   ++EMEE    P + TY  L++  C  K
Sbjct: 273 GWCQARMLNEARDTMKEMEEHGFSPSVITYTSLIEAYCMEK 313



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 36/163 (22%), Positives = 74/163 (45%)
 Frame = +3

Query: 12  EMERCGIHPCVISYTSLIEAYCHDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGKAK 191
           +M++ G+     +  +L++  C +K  ++   +  E++     P+  ++  ++H   +A+
Sbjct: 220 KMDQFGVVRDTKAMNALLDTLCKEKSVKRARGVFQELRGV-VPPDESSFNTLVHGWCQAR 278

Query: 192 ETYEALGIYERMKKNGCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDVTTYN 371
              EA    + M+++G  P    Y SLI         Q    I +EM   GC P+V TY 
Sbjct: 279 MLNEARDTMKEMEEHGFSPSVITYTSLIEAYCMEKDFQTVYAILNEMCSKGCRPNVITYT 338

Query: 372 TMISVACVHSQVKDALKLLQEMEERLCKPDLKTYAPLLKICCR 500
            ++       + ++AL +  +++   C PD   Y  ++ I  R
Sbjct: 339 IVMHALGKAGRTQEALDVFDKVKRDGCVPDASFYNSIIYILGR 381


>ref|XP_002314678.1| predicted protein [Populus trichocarpa] gi|222863718|gb|EEF00849.1|
           predicted protein [Populus trichocarpa]
          Length = 497

 Score =  224 bits (570), Expect = 7e-57
 Identities = 102/167 (61%), Positives = 131/167 (78%)
 Frame = +3

Query: 6   LEEMERCGIHPCVISYTSLIEAYCHDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGK 185
           +EEME+ G HP V+SY+  I AYC  KDFR V+A+ DEMQ KGC PNV+TYT VMHALGK
Sbjct: 249 MEEMEKHGFHPDVVSYSCFIAAYCEQKDFRNVEAVFDEMQEKGCKPNVITYTTVMHALGK 308

Query: 186 AKETYEALGIYERMKKNGCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDVTT 365
           A++  EAL +YE+MK+NGC+PD+ FY+SLIY+ S++GR+++A  +F++M K G   ++  
Sbjct: 309 ARQLNEALEVYEKMKRNGCLPDSKFYSSLIYVLSQSGRIKDAWDVFEDMEKQGVCRNLWV 368

Query: 366 YNTMISVACVHSQVKDALKLLQEMEERLCKPDLKTYAPLLKICCRRK 506
           YNTMIS AC HSQ   ALKLL+ ME   CKPD+KTYAPLLK+CCRRK
Sbjct: 369 YNTMISSACAHSQGGSALKLLERMEGDSCKPDVKTYAPLLKMCCRRK 415



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
 Frame = +3

Query: 132 GCSPNVVTYTIVMHALGKAKETYEALGIYERMKKNGCVP-DTSFYNSLIYICSKAGRLQE 308
           G S +     ++M AL K  +  +A   +   K   C+  D+S +N LI+   KA     
Sbjct: 187 GASKDREALNVLMDALVKEGDVEDAHSAFLEFKD--CITLDSSSFNILIHGYCKARMFVV 244

Query: 309 ASKIFDEMSKSGCTPDVTTYNTMISVACVHSQVKDALKLLQEMEERLCKPDLKTYAPLL 485
           A KI +EM K G  PDV +Y+  I+  C     ++   +  EM+E+ CKP++ TY  ++
Sbjct: 245 ARKIMEEMEKHGFHPDVVSYSCFIAAYCEQKDFRNVEAVFDEMQEKGCKPNVITYTTVM 303



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 39/152 (25%), Positives = 75/152 (49%)
 Frame = +3

Query: 51  YTSLIEAYCHDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGKAKETYEALGIYERMK 230
           Y  +I+     K F  + +L+++M+      ++ T + VM  L KA++  +A+ ++  ++
Sbjct: 125 YDYMIDILGKFKKFSLMWSLVEQMKGLNGYVSLATASKVMRRLAKARKYKDAIDVFRGIE 184

Query: 231 KNGCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDVTTYNTMISVACVHSQVK 410
           K G   D    N L+    K G +++A   F E  K   T D +++N +I   C      
Sbjct: 185 KYGASKDREALNVLMDALVKEGDVEDAHSAFLEF-KDCITLDSSSFNILIHGYCKARMFV 243

Query: 411 DALKLLQEMEERLCKPDLKTYAPLLKICCRRK 506
            A K+++EME+    PD+ +Y+  +   C +K
Sbjct: 244 VARKIMEEMEKHGFHPDVVSYSCFIAAYCEQK 275


>ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Cucumis sativus]
          Length = 614

 Score =  223 bits (567), Expect = 2e-56
 Identities = 104/165 (63%), Positives = 131/165 (79%)
 Frame = +3

Query: 12  EMERCGIHPCVISYTSLIEAYCHDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGKAK 191
           E+E+ G+ P VISYT+ IEA+C +KDFR VD +L +M+ KGC PNV+T+TI+MHALGKAK
Sbjct: 359 EVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKAK 418

Query: 192 ETYEALGIYERMKKNGCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDVTTYN 371
           +  EAL +YE+MKK GCVPD+SFY+SLI+I  KAGRL +  +I ++M K G TPDV TYN
Sbjct: 419 QINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYN 478

Query: 372 TMISVACVHSQVKDALKLLQEMEERLCKPDLKTYAPLLKICCRRK 506
           T+IS AC HSQ + AL LL +MEE  CKPDLKTY PLLK+ CR+K
Sbjct: 479 TLISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKK 523



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 34/180 (18%)
 Frame = +3

Query: 48  SYTSLIEAYCHDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGKAKETYEALGIYERM 227
           SY S+++     K+FR +  L+DEM     S ++ T + V+  L +A    EA+  +  +
Sbjct: 232 SYNSMVDILGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARAGRHQEAIHAFRNI 291

Query: 228 KKNGCVPDT----------------------------------SFYNSLIYICSKAGRLQ 305
           +K G   DT                                  + +N LI+   KA +L 
Sbjct: 292 EKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFNVLIHGYCKAKKLD 351

Query: 306 EASKIFDEMSKSGCTPDVTTYNTMISVACVHSQVKDALKLLQEMEERLCKPDLKTYAPLL 485
           EA KI  E+ KSG  PDV +Y   I   C     ++  K+L +ME + CKP++ T+  ++
Sbjct: 352 EAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIM 411



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 36/158 (22%), Positives = 73/158 (46%)
 Frame = +3

Query: 9   EEMERCGIHPCVISYTSLIEAYCHDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGKA 188
           E+M++ G  P    Y+SLI           V  ++++M+ +G +P+V+TY  ++      
Sbjct: 428 EKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNTLISCACAH 487

Query: 189 KETYEALGIYERMKKNGCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDVTTY 368
            +   AL +  +M++  C PD   Y+ L+ +  +  R++    + D M K+  + +  TY
Sbjct: 488 SQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKNDVSIEAGTY 547

Query: 369 NTMISVACVHSQVKDALKLLQEMEERLCKPDLKTYAPL 482
             ++   C + ++  A     EM  +   P   T+  L
Sbjct: 548 AILVRGLCENGKLHLACSFFGEMLSKAMVPKDSTFKML 585


>ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Cucumis sativus]
          Length = 591

 Score =  223 bits (567), Expect = 2e-56
 Identities = 104/165 (63%), Positives = 131/165 (79%)
 Frame = +3

Query: 12  EMERCGIHPCVISYTSLIEAYCHDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGKAK 191
           E+E+ G+ P VISYT+ IEA+C +KDFR VD +L +M+ KGC PNV+T+TI+MHALGKAK
Sbjct: 336 EVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKAK 395

Query: 192 ETYEALGIYERMKKNGCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDVTTYN 371
           +  EAL +YE+MKK GCVPD+SFY+SLI+I  KAGRL +  +I ++M K G TPDV TYN
Sbjct: 396 QINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYN 455

Query: 372 TMISVACVHSQVKDALKLLQEMEERLCKPDLKTYAPLLKICCRRK 506
           T+IS AC HSQ + AL LL +MEE  CKPDLKTY PLLK+ CR+K
Sbjct: 456 TLISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKK 500



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 34/180 (18%)
 Frame = +3

Query: 48  SYTSLIEAYCHDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGKAKETYEALGIYERM 227
           SY S+++     K+FR +  L+DEM     S ++ T + V+  L +A    EA+  +  +
Sbjct: 209 SYNSMVDILGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARAGRHQEAIHAFRNI 268

Query: 228 KKNGCVPDT----------------------------------SFYNSLIYICSKAGRLQ 305
           +K G   DT                                  + +N LI+   KA +L 
Sbjct: 269 EKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFNVLIHGYCKAKKLD 328

Query: 306 EASKIFDEMSKSGCTPDVTTYNTMISVACVHSQVKDALKLLQEMEERLCKPDLKTYAPLL 485
           EA KI  E+ KSG  PDV +Y   I   C     ++  K+L +ME + CKP++ T+  ++
Sbjct: 329 EAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIM 388



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 36/158 (22%), Positives = 73/158 (46%)
 Frame = +3

Query: 9   EEMERCGIHPCVISYTSLIEAYCHDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGKA 188
           E+M++ G  P    Y+SLI           V  ++++M+ +G +P+V+TY  ++      
Sbjct: 405 EKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNTLISCACAH 464

Query: 189 KETYEALGIYERMKKNGCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKSGCTPDVTTY 368
            +   AL +  +M++  C PD   Y+ L+ +  +  R++    + D M K+  + +  TY
Sbjct: 465 SQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKNDVSIEAGTY 524

Query: 369 NTMISVACVHSQVKDALKLLQEMEERLCKPDLKTYAPL 482
             ++   C + ++  A     EM  +   P   T+  L
Sbjct: 525 AILVRGLCENGKLHLACSFFGEMLSKAMVPKDSTFKML 562