BLASTX nr result
ID: Coptis23_contig00025350
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00025350
(499 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containi... 120 1e-25
ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containi... 111 5e-23
ref|XP_002326370.1| predicted protein [Populus trichocarpa] gi|2... 111 7e-23
ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containi... 108 4e-22
ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containi... 102 4e-20
>ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
[Vitis vinifera] gi|296084392|emb|CBI24780.3| unnamed
protein product [Vitis vinifera]
Length = 890
Score = 120 bits (300), Expect = 1e-25
Identities = 58/88 (65%), Positives = 71/88 (80%)
Frame = -1
Query: 499 KQGPIPNLESYKLLICGLCNEGNIQKAKTVFCTLLRPEYNYDEIAWKVLIEGLLKKGLVE 320
+ G +P LESYKLL+CGL EG+ +KAK VF LL YNYDE+AWKVLI+GLLK+ LV+
Sbjct: 800 ENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVD 859
Query: 319 ECSKLVSIMEENGCKPNSHTYTLLIEGL 236
ECS+L+ IMEE GC+PN TY+LLIEGL
Sbjct: 860 ECSELIDIMEEKGCQPNPLTYSLLIEGL 887
Score = 62.8 bits (151), Expect = 3e-08
Identities = 28/88 (31%), Positives = 51/88 (57%)
Frame = -1
Query: 499 KQGPIPNLESYKLLICGLCNEGNIQKAKTVFCTLLRPEYNYDEIAWKVLIEGLLKKGLVE 320
++G PN+ +Y +LI GLC E + +A+ + + + + LI+G K+G+++
Sbjct: 327 EKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMID 386
Query: 319 ECSKLVSIMEENGCKPNSHTYTLLIEGL 236
+ +++ +ME N C PN+ TY LI GL
Sbjct: 387 DAFEILDLMESNSCGPNTRTYNELICGL 414
Score = 62.4 bits (150), Expect = 4e-08
Identities = 30/88 (34%), Positives = 51/88 (57%)
Frame = -1
Query: 499 KQGPIPNLESYKLLICGLCNEGNIQKAKTVFCTLLRPEYNYDEIAWKVLIEGLLKKGLVE 320
+ G +P+ +Y + I LC EG +++A T+F ++ +E+ + LI+G K G ++
Sbjct: 467 ENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKID 526
Query: 319 ECSKLVSIMEENGCKPNSHTYTLLIEGL 236
L+ M + C PNS+TY +LIEGL
Sbjct: 527 VAYSLLERMLNDACLPNSYTYNVLIEGL 554
Score = 57.4 bits (137), Expect = 1e-06
Identities = 29/83 (34%), Positives = 45/83 (54%)
Frame = -1
Query: 484 PNLESYKLLICGLCNEGNIQKAKTVFCTLLRPEYNYDEIAWKVLIEGLLKKGLVEECSKL 305
PN +Y LICGLC + + KA + +L + + I + LI G K +E +L
Sbjct: 402 PNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRL 461
Query: 304 VSIMEENGCKPNSHTYTLLIEGL 236
+S+M ENG P+ TY++ I+ L
Sbjct: 462 LSLMNENGLVPDQWTYSVFIDTL 484
Score = 56.2 bits (134), Expect = 3e-06
Identities = 33/82 (40%), Positives = 42/82 (51%)
Frame = -1
Query: 481 NLESYKLLICGLCNEGNIQKAKTVFCTLLRPEYNYDEIAWKVLIEGLLKKGLVEECSKLV 302
N SY LI GLC G I +A +F + + VLI L G E L
Sbjct: 263 NEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLF 322
Query: 301 SIMEENGCKPNSHTYTLLIEGL 236
+ M+E GC+PN HTYT+LI+GL
Sbjct: 323 NEMKEKGCEPNVHTYTVLIDGL 344
>ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like
[Cucumis sativus] gi|449522905|ref|XP_004168466.1|
PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 915
Score = 111 bits (278), Expect = 5e-23
Identities = 51/83 (61%), Positives = 67/83 (80%)
Frame = -1
Query: 487 IPNLESYKLLICGLCNEGNIQKAKTVFCTLLRPEYNYDEIAWKVLIEGLLKKGLVEECSK 308
+P+L+S KLL+CGL +EGN +KAK VFC+ L+ EYNYDE+ WKVLI+GLLKKGL ++CS
Sbjct: 825 LPHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEYNYDEMVWKVLIDGLLKKGLSDKCSD 884
Query: 307 LVSIMEENGCKPNSHTYTLLIEG 239
L IME GC+ + TY++LIEG
Sbjct: 885 LFGIMETQGCQIHPKTYSMLIEG 907
Score = 70.1 bits (170), Expect = 2e-10
Identities = 33/88 (37%), Positives = 47/88 (53%)
Frame = -1
Query: 484 PNLESYKLLICGLCNEGNIQKAKTVFCTLLRPEYNYDEIAWKVLIEGLLKKGLVEECSKL 305
PN+ +Y +LIC LC + N AK + +L + + LI+G KKGL ++
Sbjct: 342 PNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEI 401
Query: 304 VSIMEENGCKPNSHTYTLLIEGLSDGHN 221
+S+ME N C PN+ TY LI G G N
Sbjct: 402 LSLMESNNCSPNARTYNELILGFCRGKN 429
Score = 56.6 bits (135), Expect = 2e-06
Identities = 30/82 (36%), Positives = 44/82 (53%)
Frame = -1
Query: 484 PNLESYKLLICGLCNEGNIQKAKTVFCTLLRPEYNYDEIAWKVLIEGLLKKGLVEECSKL 305
PN+ +Y +LI G C EG++ A + + DE + V I+ L K+GLVEE L
Sbjct: 447 PNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSL 506
Query: 304 VSIMEENGCKPNSHTYTLLIEG 239
++E G K N Y+ LI+G
Sbjct: 507 FESLKEKGIKANEVIYSTLIDG 528
Score = 55.8 bits (133), Expect = 3e-06
Identities = 28/83 (33%), Positives = 46/83 (55%)
Frame = -1
Query: 484 PNLESYKLLICGLCNEGNIQKAKTVFCTLLRPEYNYDEIAWKVLIEGLLKKGLVEECSKL 305
PN +Y LI G C NI KA ++ +L + + + + +LI G K+G + KL
Sbjct: 412 PNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKL 471
Query: 304 VSIMEENGCKPNSHTYTLLIEGL 236
+S+M E+G P+ TY++ I+ L
Sbjct: 472 LSLMNESGLVPDEWTYSVFIDTL 494
Score = 55.1 bits (131), Expect = 6e-06
Identities = 29/87 (33%), Positives = 48/87 (55%)
Frame = -1
Query: 499 KQGPIPNLESYKLLICGLCNEGNIQKAKTVFCTLLRPEYNYDEIAWKVLIEGLLKKGLVE 320
+ G +P+ +Y + I LC G +++A+++F +L +E+ + LI+G K G V
Sbjct: 477 ESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVS 536
Query: 319 ECSKLVSIMEENGCKPNSHTYTLLIEG 239
+ L+ M GC PNS TY LI+G
Sbjct: 537 DGRFLLDKMLSAGCVPNSITYNSLIDG 563
>ref|XP_002326370.1| predicted protein [Populus trichocarpa] gi|222833563|gb|EEE72040.1|
predicted protein [Populus trichocarpa]
Length = 107
Score = 111 bits (277), Expect = 7e-23
Identities = 53/92 (57%), Positives = 68/92 (73%)
Frame = -1
Query: 499 KQGPIPNLESYKLLICGLCNEGNIQKAKTVFCTLLRPEYNYDEIAWKVLIEGLLKKGLVE 320
+ G +P LES KLL+CGL +EG +KAK VF LL YNYDE+AWK+LI+GLLK GL +
Sbjct: 14 EHGHLPLLESCKLLLCGLYDEGENEKAKAVFVHLLLCGYNYDEVAWKILIDGLLKSGLAD 73
Query: 319 ECSKLVSIMEENGCKPNSHTYTLLIEGLSDGH 224
CS+L+S+ME+ GC+ + TYT LIEGL H
Sbjct: 74 RCSELLSVMEKRGCQIDPLTYTKLIEGLDGSH 105
>ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like
[Glycine max]
Length = 892
Score = 108 bits (270), Expect = 4e-22
Identities = 48/85 (56%), Positives = 70/85 (82%)
Frame = -1
Query: 487 IPNLESYKLLICGLCNEGNIQKAKTVFCTLLRPEYNYDEIAWKVLIEGLLKKGLVEECSK 308
+ +LESYKLLICGL + N +KA+ VFC+LLR YNYDE+AWKVLI+GL K G V++CS+
Sbjct: 806 LAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLAKTGYVDQCSE 865
Query: 307 LVSIMEENGCKPNSHTYTLLIEGLS 233
L+++ME+NGC+ + TY++L++ L+
Sbjct: 866 LLNLMEKNGCRLHPETYSMLMQELN 890
Score = 57.0 bits (136), Expect = 2e-06
Identities = 30/80 (37%), Positives = 45/80 (56%)
Frame = -1
Query: 481 NLESYKLLICGLCNEGNIQKAKTVFCTLLRPEYNYDEIAWKVLIEGLLKKGLVEECSKLV 302
N +Y LI G C G I+ A ++F +L E + I + V+I+GL K+G V++ LV
Sbjct: 499 NEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLV 558
Query: 301 SIMEENGCKPNSHTYTLLIE 242
M + KP HTY +L+E
Sbjct: 559 EDMAKFDVKPTLHTYNILVE 578
>ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 739
Score = 102 bits (253), Expect = 4e-20
Identities = 48/93 (51%), Positives = 65/93 (69%)
Frame = -1
Query: 499 KQGPIPNLESYKLLICGLCNEGNIQKAKTVFCTLLRPEYNYDEIAWKVLIEGLLKKGLVE 320
K G IP LESY+ +I LC EG+IQ AK VF +L EYNY+EIAW++LI+GLL+KG V
Sbjct: 641 KSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLSKEYNYEEIAWRILIDGLLQKGYVA 700
Query: 319 ECSKLVSIMEENGCKPNSHTYTLLIEGLSDGHN 221
ECS L+S+MEE +P+ Y L ++D ++
Sbjct: 701 ECSSLLSVMEEKNYRPSDALYARLTGKITDAND 733