BLASTX nr result
ID: Coptis23_contig00025327
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00025327
(811 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002316034.1| GRAS family transcription factor [Populus tr... 276 5e-72
ref|XP_002519213.1| DELLA protein RGL1, putative [Ricinus commun... 268 1e-69
ref|XP_002270640.2| PREDICTED: DELLA protein GAI1-like [Vitis vi... 266 4e-69
emb|CBI36955.3| unnamed protein product [Vitis vinifera] 266 4e-69
ref|XP_002329212.1| GRAS family transcription factor [Populus tr... 261 1e-67
>ref|XP_002316034.1| GRAS family transcription factor [Populus trichocarpa]
gi|222865074|gb|EEF02205.1| GRAS family transcription
factor [Populus trichocarpa]
Length = 588
Score = 276 bits (705), Expect = 5e-72
Identities = 135/215 (62%), Positives = 170/215 (79%)
Frame = +1
Query: 1 TGRRLSGFAETINLPFSFKVVMVSHMKDIKEHLFELQAEEAVAVFSPMVLRTMIAQPDHL 180
TG+RL FAET+N+PFSFKVVMVS M D+K+ LFEL AEEAVAV++ LR++IA P+ L
Sbjct: 369 TGKRLMSFAETMNIPFSFKVVMVSDMLDLKKDLFELGAEEAVAVYAENSLRSLIALPNRL 428
Query: 181 EDLMKAIKHINPCIMVISEMEADHNSPIFVSRFVETLFFYGAFFDSFDACTDRDDQNRMM 360
+ +MK ++INP I+V+ E+EA++NSP FV+RF+E LFFY A+FD FDAC RD NRM+
Sbjct: 429 DSIMKVFRNINPRIVVVMEVEANNNSPSFVNRFIEALFFYSAYFDCFDACMGRDSPNRMI 488
Query: 361 AEKIFSSQAIRNIVATEGQERTIRHVGINVWRAFFSQFEMVETELSESSLYQARLVLEKF 540
AE + Q IRNIVATEG+ER IRHV ++VWR FF++F MVETELS+SSLYQA L+L K
Sbjct: 489 AESKYIRQEIRNIVATEGEERKIRHVKLDVWRTFFARFAMVETELSKSSLYQASLLLNKI 548
Query: 541 ACASSCSLDMKGKCLTMGWKGTPFHSLSAWKFHQS 645
A SSC+LDM K L +GWKGTP HSLS WKF ++
Sbjct: 549 ARWSSCTLDMNEKSLVIGWKGTPMHSLSVWKFDKN 583
>ref|XP_002519213.1| DELLA protein RGL1, putative [Ricinus communis]
gi|223541528|gb|EEF43077.1| DELLA protein RGL1, putative
[Ricinus communis]
Length = 562
Score = 268 bits (684), Expect = 1e-69
Identities = 126/212 (59%), Positives = 164/212 (77%)
Frame = +1
Query: 1 TGRRLSGFAETINLPFSFKVVMVSHMKDIKEHLFELQAEEAVAVFSPMVLRTMIAQPDHL 180
TG+RL+ FAE++N+PFSF+ VMVS M D+K+ LFEL +EEAVAV+S L ++ P+ L
Sbjct: 350 TGKRLASFAESMNVPFSFRAVMVSDMLDLKKELFELDSEEAVAVYSEYFLMNLLVAPNRL 409
Query: 181 EDLMKAIKHINPCIMVISEMEADHNSPIFVSRFVETLFFYGAFFDSFDACTDRDDQNRMM 360
E +M +++INP +MV+ E+EA++NSP FV RF+E LFFY A+FD FDAC +RDD NRM
Sbjct: 410 ESIMGMLRNINPNVMVVMEVEANNNSPSFVHRFIEALFFYSAYFDCFDACMERDDPNRMA 469
Query: 361 AEKIFSSQAIRNIVATEGQERTIRHVGINVWRAFFSQFEMVETELSESSLYQARLVLEKF 540
AE +F IRNIVA+EG+ER IRHV I+VWR+FF++F M++TELS SSLYQA LVL+KF
Sbjct: 470 AESVFFHHGIRNIVASEGEERRIRHVKIDVWRSFFARFGMIQTELSTSSLYQASLVLKKF 529
Query: 541 ACASSCSLDMKGKCLTMGWKGTPFHSLSAWKF 636
C SSC+LD+ K L + WK TP SLS WKF
Sbjct: 530 PCGSSCTLDVNEKSLNISWKATPISSLSVWKF 561
>ref|XP_002270640.2| PREDICTED: DELLA protein GAI1-like [Vitis vinifera]
Length = 616
Score = 266 bits (680), Expect = 4e-69
Identities = 123/214 (57%), Positives = 168/214 (78%), Gaps = 2/214 (0%)
Frame = +1
Query: 1 TGRRLSGFAETINLPFSFKVVMVSHMKDIKEHLFELQAEEAVAVFSPMVLRTMIAQPDHL 180
TG+RL FA+++NLPFSF VV V+ MK++KE L ++AEE VAV++P+VLR+MI +PD+L
Sbjct: 402 TGKRLESFAKSLNLPFSFNVVFVTEMKELKEELLAVEAEEVVAVYAPLVLRSMIPRPDYL 461
Query: 181 EDLMKAIKHINPCIMVISEMEADHNSPIFVSRFVETLFFYGAFFDSFDAC--TDRDDQNR 354
+ LM+ IK ++P IMV++E+EA+HNSP FV+RF+E LFFY AFF + C + Q R
Sbjct: 462 DVLMRVIKKLSPSIMVVTEVEANHNSPSFVTRFIEALFFYSAFFHCLEVCMGSTTKSQYR 521
Query: 355 MMAEKIFSSQAIRNIVATEGQERTIRHVGINVWRAFFSQFEMVETELSESSLYQARLVLE 534
M+ E +F + IRN++A EG+ER +R+V ++VWRAFFS+F MVE E SE+SLYQA L+++
Sbjct: 522 MITEAMFFGEGIRNMIAAEGEERVVRNVKMDVWRAFFSRFGMVEMEFSEASLYQASLIIK 581
Query: 535 KFACASSCSLDMKGKCLTMGWKGTPFHSLSAWKF 636
+FAC S CSL+ GKCL +GWKGTP HSLSAWKF
Sbjct: 582 RFACGSCCSLEKDGKCLIVGWKGTPIHSLSAWKF 615
>emb|CBI36955.3| unnamed protein product [Vitis vinifera]
Length = 582
Score = 266 bits (680), Expect = 4e-69
Identities = 123/214 (57%), Positives = 168/214 (78%), Gaps = 2/214 (0%)
Frame = +1
Query: 1 TGRRLSGFAETINLPFSFKVVMVSHMKDIKEHLFELQAEEAVAVFSPMVLRTMIAQPDHL 180
TG+RL FA+++NLPFSF VV V+ MK++KE L ++AEE VAV++P+VLR+MI +PD+L
Sbjct: 368 TGKRLESFAKSLNLPFSFNVVFVTEMKELKEELLAVEAEEVVAVYAPLVLRSMIPRPDYL 427
Query: 181 EDLMKAIKHINPCIMVISEMEADHNSPIFVSRFVETLFFYGAFFDSFDAC--TDRDDQNR 354
+ LM+ IK ++P IMV++E+EA+HNSP FV+RF+E LFFY AFF + C + Q R
Sbjct: 428 DVLMRVIKKLSPSIMVVTEVEANHNSPSFVTRFIEALFFYSAFFHCLEVCMGSTTKSQYR 487
Query: 355 MMAEKIFSSQAIRNIVATEGQERTIRHVGINVWRAFFSQFEMVETELSESSLYQARLVLE 534
M+ E +F + IRN++A EG+ER +R+V ++VWRAFFS+F MVE E SE+SLYQA L+++
Sbjct: 488 MITEAMFFGEGIRNMIAAEGEERVVRNVKMDVWRAFFSRFGMVEMEFSEASLYQASLIIK 547
Query: 535 KFACASSCSLDMKGKCLTMGWKGTPFHSLSAWKF 636
+FAC S CSL+ GKCL +GWKGTP HSLSAWKF
Sbjct: 548 RFACGSCCSLEKDGKCLIVGWKGTPIHSLSAWKF 581
>ref|XP_002329212.1| GRAS family transcription factor [Populus trichocarpa]
gi|222870993|gb|EEF08124.1| GRAS family transcription
factor [Populus trichocarpa]
Length = 594
Score = 261 bits (668), Expect = 1e-67
Identities = 122/212 (57%), Positives = 165/212 (77%)
Frame = +1
Query: 1 TGRRLSGFAETINLPFSFKVVMVSHMKDIKEHLFELQAEEAVAVFSPMVLRTMIAQPDHL 180
TGR L FA+ +N+PFSFK+VMVS + D+KE+L E+ EE +AV+S + R +IA P+ L
Sbjct: 382 TGRWLKSFAQNMNIPFSFKIVMVSDLLDLKENLLEIDVEEKIAVYSSYLPRKLIAMPNRL 441
Query: 181 EDLMKAIKHINPCIMVISEMEADHNSPIFVSRFVETLFFYGAFFDSFDACTDRDDQNRMM 360
+ +MK I++INPCIMV++E+EA+HN+P FV RFV+ LF+Y A+FD DAC +RDD NRM+
Sbjct: 442 DSMMKMIRNINPCIMVVTEVEANHNAPSFVHRFVDLLFYYSAYFDCLDACMERDDPNRMI 501
Query: 361 AEKIFSSQAIRNIVATEGQERTIRHVGINVWRAFFSQFEMVETELSESSLYQARLVLEKF 540
E ++ + IRN VA+EG+ER IR V ++VWRAFF++F MVET+LS SSL QA+L+++KF
Sbjct: 502 TESLYFGEGIRNSVASEGEERIIRSVKLDVWRAFFARFGMVETDLSSSSLDQAKLIVKKF 561
Query: 541 ACASSCSLDMKGKCLTMGWKGTPFHSLSAWKF 636
ASS +LD+ GK L GWKGTP HSLSAW F
Sbjct: 562 NFASSFTLDVDGKSLLFGWKGTPLHSLSAWNF 593