BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025316
         (482 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_197667.1| DNA/RNA helicase protein RAD5 [Arabidopsis thal...   133   1e-29
ref|XP_002874084.1| hypothetical protein ARALYDRAFT_489124 [Arab...   130   8e-29
ref|XP_002527439.1| DNA repair helicase rad5,16, putative [Ricin...   130   8e-29
gb|AAS79594.1| putative DNA repair protein [Ipomoea trifida] gi|...   130   8e-29
ref|XP_002270098.1| PREDICTED: putative SWI/SNF-related matrix-a...   130   1e-28

>ref|NP_197667.1| DNA/RNA helicase protein RAD5 [Arabidopsis thaliana]
           gi|60390961|sp|Q9FNI6.1|SM3L2_ARATH RecName:
           Full=Putative SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin subfamily A
           member 3-like 2; Short=SMARCA3-like protein 2
           gi|10178249|dbj|BAB11681.1| DNA repair protein RAD5
           protein [Arabidopsis thaliana]
           gi|110737306|dbj|BAF00599.1| hypothetical protein
           [Arabidopsis thaliana] gi|332005687|gb|AED93070.1|
           DNA/RNA helicase protein RAD5 [Arabidopsis thaliana]
          Length = 1029

 Score =  133 bits (335), Expect = 1e-29
 Identities = 74/139 (53%), Positives = 96/139 (69%), Gaps = 11/139 (7%)
 Frame = +2

Query: 71  KVKDEMINTIRSIIGQEYSEMDIIRALHMSNNDITAAINIIFDTPNYSK----KPQPR-T 235
           KV D++++T+RS++G +YS+MDIIRALHM+N+D TAAINIIFDTP+++K     P P  +
Sbjct: 4   KVSDDLVSTVRSVVGSDYSDMDIIRALHMANHDPTAAINIIFDTPSFAKPDVATPTPSGS 63

Query: 236 LGKNEVVSKL------DSRVVSTSSSVPDVNESVCENGVKNEDGEDSEWWFVGSSEVSCL 397
            G   V S L      DS  V  +  V + NESV  NG   E    +EWWFVG SE++ L
Sbjct: 64  NGGKRVDSGLKGCTFGDSGSVGANHRVEEENESV--NGGGEESVSGNEWWFVGCSELAGL 121

Query: 398 STCKGRKLKGGDEVVFSFP 454
           STCKGRKLK GDE+VF+FP
Sbjct: 122 STCKGRKLKSGDELVFTFP 140


>ref|XP_002874084.1| hypothetical protein ARALYDRAFT_489124 [Arabidopsis lyrata subsp.
           lyrata] gi|297319921|gb|EFH50343.1| hypothetical protein
           ARALYDRAFT_489124 [Arabidopsis lyrata subsp. lyrata]
          Length = 1029

 Score =  130 bits (328), Expect = 8e-29
 Identities = 72/139 (51%), Positives = 94/139 (67%), Gaps = 11/139 (7%)
 Frame = +2

Query: 71  KVKDEMINTIRSIIGQEYSEMDIIRALHMSNNDITAAINIIFDTPNYSK----KPQPR-T 235
           KV D++++T+RS++G +YS+MDIIRALHMSN D TAAINIIFDTP++ K     P P  +
Sbjct: 4   KVSDDLVSTVRSVVGSDYSDMDIIRALHMSNRDPTAAINIIFDTPSFGKPDVATPIPSGS 63

Query: 236 LGKNEVVSKL------DSRVVSTSSSVPDVNESVCENGVKNEDGEDSEWWFVGSSEVSCL 397
            G   V +++      DS  V  +  V + +ESV  NG   E    +EWWFVG SE+  L
Sbjct: 64  NGGKRVENRIKGCSFGDSASVGVTHLVEEEDESV--NGGGEESVSGNEWWFVGCSELGGL 121

Query: 398 STCKGRKLKGGDEVVFSFP 454
           STCKGRKLK GDE+VF+FP
Sbjct: 122 STCKGRKLKSGDELVFTFP 140


>ref|XP_002527439.1| DNA repair helicase rad5,16, putative [Ricinus communis]
           gi|223533174|gb|EEF34931.1| DNA repair helicase rad5,16,
           putative [Ricinus communis]
          Length = 1028

 Score =  130 bits (328), Expect = 8e-29
 Identities = 68/141 (48%), Positives = 94/141 (66%), Gaps = 9/141 (6%)
 Frame = +2

Query: 68  NKVKDEMINTIRSIIGQEYSEMDIIRALHMSNNDITAAINIIFDTPNYSKKPQPRTLGKN 247
           NK+ DE++ T+RSI+G E+S+MDIIRALH+S ND +AAINIIFDTPN++ K +P+T  K 
Sbjct: 3   NKMTDELLTTVRSIVGPEFSDMDIIRALHLSKNDPSAAINIIFDTPNFNSKLKPQTPYKT 62

Query: 248 EVVSKLDSRVVSTSSSVPDVNES---------VCENGVKNEDGEDSEWWFVGSSEVSCLS 400
            ++   +S        V   NE+           E+   NE+G  SEWW+ GS +V+ LS
Sbjct: 63  PILENPNSNPTKEPKLVSKENENRNISVHNSDNIEDNCINENG--SEWWYAGSGDVAGLS 120

Query: 401 TCKGRKLKGGDEVVFSFPVKN 463
           T KGRKLK GD V+F+FP+K+
Sbjct: 121 TSKGRKLKAGDGVIFTFPLKS 141


>gb|AAS79594.1| putative DNA repair protein [Ipomoea trifida]
           gi|117166029|dbj|BAF36331.1| hypothetical protein
           [Ipomoea trifida]
          Length = 1040

 Score =  130 bits (328), Expect = 8e-29
 Identities = 68/153 (44%), Positives = 93/153 (60%), Gaps = 22/153 (14%)
 Frame = +2

Query: 68  NKVKDEMINTIRSIIGQEYSEMDIIRALHMSNNDITAAINIIFDTPNYSKKPQPRTLGKN 247
           NKV +E+++T+RSI+G EY+EMDIIRALHM+NND TAAINIIFDTP + K    +T    
Sbjct: 3   NKVPEELVSTVRSIVGDEYTEMDIIRALHMANNDATAAINIIFDTPGFKKLEFRKTPEVP 62

Query: 248 EVVSKLDSRVVSTSSSVPDVNESVCENGVKNEDGE----------------------DSE 361
            + S   ++ + +++      +  CE    +++G                       +SE
Sbjct: 63  NLNSSSGTQSLGSTTRRSSSEDKKCERSTNSDNGSQQKTENRESNNGCRSDADGCEMESE 122

Query: 362 WWFVGSSEVSCLSTCKGRKLKGGDEVVFSFPVK 460
           WWFVG+SEVS LSTCKGR LK GDEV F+FP +
Sbjct: 123 WWFVGTSEVSGLSTCKGRSLKPGDEVYFTFPAE 155


>ref|XP_002270098.1| PREDICTED: putative SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin subfamily A
           member 3-like 2-like isoform 2 [Vitis vinifera]
          Length = 1016

 Score =  130 bits (326), Expect = 1e-28
 Identities = 68/134 (50%), Positives = 89/134 (66%)
 Frame = +2

Query: 71  KVKDEMINTIRSIIGQEYSEMDIIRALHMSNNDITAAINIIFDTPNYSKKPQPRTLGKNE 250
           KV DE+++T+RS+IG  YS+MDIIRALHM+NND+TAAINIIFDTPN+  K    T     
Sbjct: 4   KVTDELLSTVRSVIGLNYSDMDIIRALHMANNDVTAAINIIFDTPNFGTKMGKNTETFRR 63

Query: 251 VVSKLDSRVVSTSSSVPDVNESVCENGVKNEDGEDSEWWFVGSSEVSCLSTCKGRKLKGG 430
             S + + VVS S    D  ++  E   +      SEWWF+  SE++ LSTCKGR++K G
Sbjct: 64  NSSSVSAIVVSDSYRNEDETKNF-EASSRCSGSIGSEWWFLNCSELAGLSTCKGRRMKSG 122

Query: 431 DEVVFSFPVKNLGN 472
           DEV F+FP+K   N
Sbjct: 123 DEVFFTFPLKKSPN 136