BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025181
         (368 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...    65   7e-09
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    64   2e-08
ref|XP_002522932.1| conserved hypothetical protein [Ricinus comm...    60   1e-07
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript...    60   2e-07
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...    60   2e-07

>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
 Frame = -2

Query: 265 RNFLRTGNPATTKRITVGWDKICKPYEEGRLGIRRIKDLNRALLMKLGWRVLTQKDD-FA 89
           RNFL        K+  + W K+C+P   G LG+R  KD+NRALL K+GWR+L  K   +A
Sbjct: 621 RNFLWGSTVEKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSLWA 680

Query: 88  QFMRHKYFTSD----NEMIKYHVTSSIWRGL 8
           + +R KY  +D    + ++     SS WR +
Sbjct: 681 RVLRRKYKVTDVHDSSWLVPKATWSSTWRSI 711


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 27/75 (36%), Positives = 46/75 (61%)
 Frame = -2

Query: 229 KRITVGWDKICKPYEEGRLGIRRIKDLNRALLMKLGWRVLTQKDDFAQFMRHKYFTSDNE 50
           K  TV W  +C+P+ EG L I+  + +N A ++KL W +L+    +A  ++ ++F S  +
Sbjct: 772 KVCTVSWKILCRPWSEGGLDIKSTRLINNAAMLKLAWNLLSSNSQWAVLLKRRFF-SQGQ 830

Query: 49  MIKYHVTSSIWRGLK 5
            I+Y V SS+W G+K
Sbjct: 831 PIRYFVKSSVWHGVK 845


>ref|XP_002522932.1| conserved hypothetical protein [Ricinus communis]
           gi|223537826|gb|EEF39443.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 303

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 25/70 (35%), Positives = 42/70 (60%)
 Frame = -2

Query: 268 LRNFLRTGNPATTKRITVGWDKICKPYEEGRLGIRRIKDLNRALLMKLGWRVLTQKDDFA 89
           +RNFL TG+ +  K +TV W   CKP  EG +G++R+  LNR +L ++ W+  +      
Sbjct: 209 IRNFLWTGSVSYKKLVTVKWGHCCKPISEGGIGLKRLDVLNRTMLCRIAWKFYSNDSFVY 268

Query: 88  QFMRHKYFTS 59
           +F+R +Y  +
Sbjct: 269 RFLRSRYLVA 278


>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 732

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
 Frame = -2

Query: 265 RNFLRTGNPATTKRITVGWDKICKPYEEGRLGIRRIKDLNRALLMKLGWRVLTQKDD-FA 89
           R+FL   +    K+  + W ++CKP  EG LGIR+ +D+N+ALL K+GWR++      +A
Sbjct: 348 RSFLWGSSVTQRKQHLISWKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQDYHSLWA 407

Query: 88  QFMRHKYFTSDNEMIKY----HVTSSIWRGL 8
           + MR  Y   D     +     V SS WR +
Sbjct: 408 RIMRCNYRVQDVRDGAWTKVRSVCSSTWRSV 438


>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1231

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
 Frame = -2

Query: 271 FLRNFLRTGNPATTKRITVGWDKICKPYEEGRLGIRRIKDLNRALLMKLGWRVLTQKDD- 95
           + R FL        K+  + W KICKP  EG +G+R  +D+N+AL+ K+GWR+L  K+  
Sbjct: 684 YSRTFLWGSTMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESL 743

Query: 94  FAQFMRHKY---FTSDNEMIKYHVT-SSIWRGL 8
           +A+ +R KY      D   +K     SS WR +
Sbjct: 744 WARVVRKKYKVGGVQDTSWLKPQPRWSSTWRSV 776