BLASTX nr result

ID: Coptis23_contig00025076 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025076
         (556 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFW73783.1| hypothetical protein ZEAMMB73_161012 [Zea mays]         66   4e-09
ref|XP_003560419.1| PREDICTED: F-box protein At5g07610-like [Bra...    63   4e-08
gb|EAY74130.1| hypothetical protein OsI_02012 [Oryza sativa Indi...    62   5e-08
ref|XP_002467649.1| hypothetical protein SORBIDRAFT_01g031620 [S...    61   1e-07
ref|XP_003563379.1| PREDICTED: F-box protein At5g07610-like [Bra...    61   1e-07

>gb|AFW73783.1| hypothetical protein ZEAMMB73_161012 [Zea mays]
          Length = 230

 Score = 65.9 bits (159), Expect = 4e-09
 Identities = 53/161 (32%), Positives = 74/161 (45%), Gaps = 23/161 (14%)
 Frame = +2

Query: 128 RAHAKTLFRSKCVCKNWQSLISDQSFINRYIKRSKSLPPSLTGFFYRTGNIIDPNDDGHV 307
           R  AK+L RSKCV K W+ LI+D+ +        K LP SL GF Y     +    DGH 
Sbjct: 25  RLGAKSLCRSKCVSKPWRDLIADRLYC-------KDLPQSLQGFLYFD---VGRRGDGHD 74

Query: 308 KFLST---GSLNYTND------------------LNVLNKGLSFMSEING--SVYVVDSN 418
              +    G L  + D                  + +L+   +F+ E  G  ++ ++DS 
Sbjct: 75  AAAANAYGGDLAGSRDGMLLRHGHGRFIDLLGKPMPLLDPSFAFLKEQPGVNAIELLDSC 134

Query: 419 NGLLLCAKKPKLSGLDYVSSTPICYFVCNPVTKQWVALPES 541
           NGLLL   +      D +      Y VCNPVT+QWVA+P S
Sbjct: 135 NGLLLFGHRRVSDTYDSLG-----YIVCNPVTEQWVAIPSS 170


>ref|XP_003560419.1| PREDICTED: F-box protein At5g07610-like [Brachypodium distachyon]
          Length = 497

 Score = 62.8 bits (151), Expect = 4e-08
 Identities = 52/144 (36%), Positives = 73/144 (50%), Gaps = 6/144 (4%)
 Frame = +2

Query: 128 RAHAKTLFRSKCVCKNWQSLISDQSFINRYIKRSKSLPPSLTGFFYRTGNIIDPNDDGHV 307
           R  AK++ R KCV  +W+SLI+D++  NR     + LP +L+GFF  T        DGH 
Sbjct: 25  RLPAKSICRFKCVSPHWRSLITDRA--NR-----RKLPQTLSGFFRHT-----VGQDGHN 72

Query: 308 K------FLSTGSLNYTNDLNVLNKGLSFMSEINGSVYVVDSNNGLLLCAKKPKLSGLDY 469
           +      F S  S     + +V +  LSF+     ++   D  NGLLLC    K S  D 
Sbjct: 73  EPISVPVFYSIVSGLGEEEKHVRDPSLSFLPGCYKTIIPKDCCNGLLLCLCW-KGSPKDE 131

Query: 470 VSSTPICYFVCNPVTKQWVALPES 541
            +     Y VCNP T++WV LP+S
Sbjct: 132 SN-----YVVCNPATEKWVILPQS 150


>gb|EAY74130.1| hypothetical protein OsI_02012 [Oryza sativa Indica Group]
          Length = 382

 Score = 62.4 bits (150), Expect = 5e-08
 Identities = 44/138 (31%), Positives = 66/138 (47%)
 Frame = +2

Query: 128 RAHAKTLFRSKCVCKNWQSLISDQSFINRYIKRSKSLPPSLTGFFYRTGNIIDPNDDGHV 307
           R   K++ R KCVCK+W SL SDQ F  +       LP    G  Y+  N      +G +
Sbjct: 23  RLPLKSVCRFKCVCKSWSSLFSDQYFCTK-------LPRRPAGLLYQDSN------NGSI 69

Query: 308 KFLSTGSLNYTNDLNVLNKGLSFMSEINGSVYVVDSNNGLLLCAKKPKLSGLDYVSSTPI 487
           +     S N     + +   LSFM   + ++ +VD +NGL+L     K    D       
Sbjct: 70  QIAKLPSGN-----SEIGTTLSFMPH-HENLKLVDCSNGLILFTHGSKSDSPDSSH---- 119

Query: 488 CYFVCNPVTKQWVALPES 541
            + VCNP T++W+ALP++
Sbjct: 120 -FIVCNPATQEWIALPDT 136


>ref|XP_002467649.1| hypothetical protein SORBIDRAFT_01g031620 [Sorghum bicolor]
           gi|241921503|gb|EER94647.1| hypothetical protein
           SORBIDRAFT_01g031620 [Sorghum bicolor]
          Length = 201

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 47/144 (32%), Positives = 66/144 (45%), Gaps = 1/144 (0%)
 Frame = +2

Query: 128 RAHAKTLFRSKCVCKNWQSLISDQSFINRYIKRSKSLPPSLTGFFYRT-GNIIDPNDDGH 304
           R   K++ R KCV K+W  LIS            K LP +L G FY T  + + P    H
Sbjct: 26  RLPVKSVCRFKCVSKHWLGLISHPD-------HRKKLPQTLAGIFYHTTSSELFPELVRH 78

Query: 305 VKFLSTGSLNYTNDLNVLNKGLSFMSEINGSVYVVDSNNGLLLCAKKPKLSGLDYVSSTP 484
              + TG         +++  LSF+   +  + ++D  NGLLLC  +       YV    
Sbjct: 79  FTNV-TGK-----GAPLISPSLSFLPG-HADITLLDCYNGLLLCRSRTTAGANRYV---- 127

Query: 485 ICYFVCNPVTKQWVALPESKHCDY 556
               VCNP T++WVALPES    +
Sbjct: 128 ----VCNPATEEWVALPESSEAGF 147


>ref|XP_003563379.1| PREDICTED: F-box protein At5g07610-like [Brachypodium distachyon]
          Length = 383

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 51/145 (35%), Positives = 74/145 (51%), Gaps = 7/145 (4%)
 Frame = +2

Query: 128 RAHAKTLFRSKCVCKNWQSLISDQSFINRYIKRSKSLPPSLTGFF-YRTGNIIDPNDDGH 304
           R  AK++ R KCV  +W+ LI+D++  NR     + LP +L+GFF Y  G    P+ DG 
Sbjct: 25  RLPAKSICRFKCVSPHWRRLITDRA--NR-----RKLPQTLSGFFRYAVG----PDGDG- 72

Query: 305 VKFLSTGSLNYT------NDLNVLNKGLSFMSEINGSVYVVDSNNGLLLCAKKPKLSGLD 466
            K +S    N         + +V +  LSF+     S+   D  NGLLLC     +   D
Sbjct: 73  -KAISAPYFNSIISGLGEEERHVHDPSLSFLPGYYRSIIPKDCCNGLLLC-----ICWKD 126

Query: 467 YVSSTPICYFVCNPVTKQWVALPES 541
             S+    Y VCNP T++W+ LP+S
Sbjct: 127 SPSNE-FHYVVCNPATEKWLILPQS 150


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