BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025059
         (1112 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331405.1| predicted protein [Populus trichocarpa] gi|2...   343   3e-92
ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus ...   340   3e-91
ref|XP_002275354.2| PREDICTED: tRNA pseudouridine synthase A-lik...   329   7e-88
emb|CBI33811.3| unnamed protein product [Vitis vinifera]              327   4e-87
ref|XP_003532450.1| PREDICTED: tRNA pseudouridine synthase A-lik...   325   2e-86

>ref|XP_002331405.1| predicted protein [Populus trichocarpa] gi|222873619|gb|EEF10750.1|
            predicted protein [Populus trichocarpa]
          Length = 428

 Score =  343 bits (881), Expect = 3e-92
 Identities = 177/314 (56%), Positives = 212/314 (67%)
 Frame = +2

Query: 2    LNTVQGIVERSLGRFVDDKKAEKLKDKCLPLEGCTTVAGRTDKGVTALKQACSFYTWRKD 181
            LNTVQG+VE+SLGRFVD+KKA++LK++C PLEGC +VAGRTDKGV+AL+Q CSFYTWRKD
Sbjct: 127  LNTVQGLVEKSLGRFVDEKKAQQLKEQCKPLEGCASVAGRTDKGVSALQQVCSFYTWRKD 186

Query: 182  IRVQDVEDAINEAAPGKLRVISVSKVSREFHPNFSAKWRRYFYIFPLNDXXXXXXXXXXX 361
            ++  ++EDAIN+ APGK+RV S+S+VSR FHPNFSAKWRRY YIFPLND           
Sbjct: 187  VKPHEIEDAINDVAPGKVRVESISEVSRAFHPNFSAKWRRYLYIFPLNDGENREEIEGEG 246

Query: 362  XXXNYGIEEHNRKLINGYGAHFXXXXXXXXXXXXXXXARDDLAESERGMKPVSFSIDKVN 541
               N+   E+  K  N  G                     D  E +   KP SFS+ +VN
Sbjct: 247  GIENFSSHENCEKQRNECG-------ELASEENVENSIISDEDELQGAKKPRSFSVCRVN 299

Query: 542  XXXXXXXGRSLSYKMFARDTKASRSTGPPTECIIYHVRATEATLPCDNKVPGKGGERVKV 721
                   G+ LSYKMFARDTKASR+ GPPTEC +YH RATE  LP  +   G     ++V
Sbjct: 300  QLLQQLEGKLLSYKMFARDTKASRNVGPPTECFLYHARATETRLPSPDHEKG-----IRV 354

Query: 722  MCVELVGNRFLRRMVRVLVSTSIREAAAGADNDALLKLMDXXXXXXXXXXXXXDGLCLLD 901
            MCVEL+ NRFLR+MVRVLV+TS+REAAAGA  DALLKLMD             DGLCL+D
Sbjct: 355  MCVELIANRFLRKMVRVLVATSVREAAAGAQEDALLKLMDATCRRATAPPAPPDGLCLVD 414

Query: 902  VGYAEFNPENCLIP 943
            VGY EF+P NCLIP
Sbjct: 415  VGYTEFDPRNCLIP 428


>ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus communis]
            gi|223536579|gb|EEF38224.1| pseudouridylate synthase,
            putative [Ricinus communis]
          Length = 443

 Score =  340 bits (873), Expect = 3e-91
 Identities = 180/314 (57%), Positives = 210/314 (66%)
 Frame = +2

Query: 2    LNTVQGIVERSLGRFVDDKKAEKLKDKCLPLEGCTTVAGRTDKGVTALKQACSFYTWRKD 181
            LNTVQG+VE+SLG+FVD+KKA++LK+ C PLEGC  VAGRTDKGV+AL+Q CSFYTWRKD
Sbjct: 142  LNTVQGLVEKSLGKFVDEKKAQQLKEACKPLEGCAVVAGRTDKGVSALRQVCSFYTWRKD 201

Query: 182  IRVQDVEDAINEAAPGKLRVISVSKVSREFHPNFSAKWRRYFYIFPLNDXXXXXXXXXXX 361
            +R  ++EDAIN +APGK+RVISVS+VSR FHPNFSAKWRRY YIFP+ND           
Sbjct: 202  VRPHEIEDAINSSAPGKIRVISVSEVSRVFHPNFSAKWRRYLYIFPINDGEDSEQSFDSE 261

Query: 362  XXXNYGIEEHNRKLINGYGAHFXXXXXXXXXXXXXXXARDDLAESERGMKPVSFSIDKVN 541
               N    E   +  NG                       D  E E   KP  FSI +VN
Sbjct: 262  DLENLRSYEKYDEQRNG-------CAELTSEEHVEELITSDKDELEGAKKPRIFSICRVN 314

Query: 542  XXXXXXXGRSLSYKMFARDTKASRSTGPPTECIIYHVRATEATLPCDNKVPGKGGERVKV 721
                   G+ LSYK+FARDTKASR+ GPPTEC IYH RATEA LPC +      GE  KV
Sbjct: 315  QLLQQLEGKLLSYKIFARDTKASRNVGPPTECFIYHARATEARLPCPDH-----GEGRKV 369

Query: 722  MCVELVGNRFLRRMVRVLVSTSIREAAAGADNDALLKLMDXXXXXXXXXXXXXDGLCLLD 901
            MCVELV NRFLR+MVRVLV+TSIREAAAGA++DALLKLMD             DGLCL D
Sbjct: 370  MCVELVANRFLRKMVRVLVATSIREAAAGAEDDALLKLMDASCRRASAPPAPPDGLCLFD 429

Query: 902  VGYAEFNPENCLIP 943
            VGY EF+ + C++P
Sbjct: 430  VGYTEFDAQICIVP 443


>ref|XP_002275354.2| PREDICTED: tRNA pseudouridine synthase A-like [Vitis vinifera]
          Length = 433

 Score =  329 bits (844), Expect = 7e-88
 Identities = 178/314 (56%), Positives = 210/314 (66%), Gaps = 1/314 (0%)
 Frame = +2

Query: 2    LNTVQGIVERSLGRFVDDKKAEKLKDKCLPLEGCTTVAGRTDKGVTALKQACSFYTWRKD 181
            LNTVQG+VE SLGRFVD++KA++LK+K LP+EG  TVAGRTDKGVTAL+Q CSFYTW+KD
Sbjct: 130  LNTVQGLVEASLGRFVDERKAQQLKEKNLPVEGMVTVAGRTDKGVTALQQVCSFYTWKKD 189

Query: 182  IRVQDVEDAINEAAPGKLRVISVSKVSREFHPNFSAKWRRYFYIFPLNDXXXXXXXXXXX 361
            ++VQD+EDAIN AAPGKLRVISVS+VSR FHPNFSAKWR YFYIFPLND           
Sbjct: 190  VKVQDIEDAINGAAPGKLRVISVSEVSRIFHPNFSAKWRHYFYIFPLNDGDDGEQISENE 249

Query: 362  XXXNYGIEEHNRKLINGYGAH-FXXXXXXXXXXXXXXXARDDLAESERGMKPVSFSIDKV 538
                  ++         YG                     DD  E E   KP +FSI +V
Sbjct: 250  ------MDIQKISFNEKYGEQGSECPAQYNGGENTENLIFDDDGEFESRKKPSTFSISRV 303

Query: 539  NXXXXXXXGRSLSYKMFARDTKASRSTGPPTECIIYHVRATEATLPCDNKVPGKGGERVK 718
            +       G+ LSYK+FARDTKASR+ GPPTEC ++H RATEA L   +      GE  K
Sbjct: 304  DQLLRQLEGKLLSYKIFARDTKASRNIGPPTECFVFHARATEARLQFSD-----DGEGTK 358

Query: 719  VMCVELVGNRFLRRMVRVLVSTSIREAAAGADNDALLKLMDXXXXXXXXXXXXXDGLCLL 898
            VMC+ELV NRFLR+MVRVLV+TSIREAAAGA+ DALLKLMD             DGLCL+
Sbjct: 359  VMCIELVANRFLRKMVRVLVATSIREAAAGAEQDALLKLMDATCRRATAPPAPPDGLCLI 418

Query: 899  DVGYAEFNPENCLI 940
            DVG+ EF+P+ C I
Sbjct: 419  DVGFTEFDPQICFI 432


>emb|CBI33811.3| unnamed protein product [Vitis vinifera]
          Length = 402

 Score =  327 bits (837), Expect = 4e-87
 Identities = 175/313 (55%), Positives = 210/313 (67%)
 Frame = +2

Query: 2   LNTVQGIVERSLGRFVDDKKAEKLKDKCLPLEGCTTVAGRTDKGVTALKQACSFYTWRKD 181
           LNTVQG+VE SLGRFVD++KA++LK+K LP+EG  TVAGRTDKGVTAL+Q CSFYTW+KD
Sbjct: 130 LNTVQGLVEASLGRFVDERKAQQLKEKNLPVEGMVTVAGRTDKGVTALQQVCSFYTWKKD 189

Query: 182 IRVQDVEDAINEAAPGKLRVISVSKVSREFHPNFSAKWRRYFYIFPLNDXXXXXXXXXXX 361
           ++VQD+EDAIN AAPGKLRVISVS+VSR FHPNFSAKWR YFYIFPLND           
Sbjct: 190 VKVQDIEDAINGAAPGKLRVISVSEVSRIFHPNFSAKWRHYFYIFPLNDGDDGEQ----- 244

Query: 362 XXXNYGIEEHNRKLINGYGAHFXXXXXXXXXXXXXXXARDDLAESERGMKPVSFSIDKVN 541
                 I E+   +                           ++ +E   KP +FSI +V+
Sbjct: 245 ------ISENEMDI-------------------------QKISFNENRKKPSTFSISRVD 273

Query: 542 XXXXXXXGRSLSYKMFARDTKASRSTGPPTECIIYHVRATEATLPCDNKVPGKGGERVKV 721
                  G+ LSYK+FARDTKASR+ GPPTEC ++H RATEA L   +      GE  KV
Sbjct: 274 QLLRQLEGKLLSYKIFARDTKASRNIGPPTECFVFHARATEARLQFSD-----DGEGTKV 328

Query: 722 MCVELVGNRFLRRMVRVLVSTSIREAAAGADNDALLKLMDXXXXXXXXXXXXXDGLCLLD 901
           MC+ELV NRFLR+MVRVLV+TSIREAAAGA+ DALLKLMD             DGLCL+D
Sbjct: 329 MCIELVANRFLRKMVRVLVATSIREAAAGAEQDALLKLMDATCRRATAPPAPPDGLCLID 388

Query: 902 VGYAEFNPENCLI 940
           VG+ EF+P+ C I
Sbjct: 389 VGFTEFDPQICFI 401


>ref|XP_003532450.1| PREDICTED: tRNA pseudouridine synthase A-like [Glycine max]
          Length = 404

 Score =  325 bits (832), Expect = 2e-86
 Identities = 177/313 (56%), Positives = 205/313 (65%)
 Frame = +2

Query: 2   LNTVQGIVERSLGRFVDDKKAEKLKDKCLPLEGCTTVAGRTDKGVTALKQACSFYTWRKD 181
           LNTVQ IVE SLG+FVD+KK + LKDK LP+EGC  VAGRTDKGVT L+Q CSFYTW+KD
Sbjct: 119 LNTVQSIVEGSLGKFVDEKKTQLLKDKGLPIEGCAIVAGRTDKGVTGLQQVCSFYTWKKD 178

Query: 182 IRVQDVEDAINEAAPGKLRVISVSKVSREFHPNFSAKWRRYFYIFPLNDXXXXXXXXXXX 361
           ++ +D+EDAIN AAPGKLRVISVS+VSR FHPNFSAKWRRY YIFPL             
Sbjct: 179 VKPRDIEDAINHAAPGKLRVISVSEVSRVFHPNFSAKWRRYLYIFPLT------------ 226

Query: 362 XXXNYGIEEHNRKLINGYGAHFXXXXXXXXXXXXXXXARDDLAESERGMKPVSFSIDKVN 541
              N G  + +      Y +                 A  D  E+E+  K  +FSI KVN
Sbjct: 227 ---NGGYTDQSSDNGEFYDS--------FKYNEIHDSASKDELENEK--KSYAFSISKVN 273

Query: 542 XXXXXXXGRSLSYKMFARDTKASRSTGPPTECIIYHVRATEATLPCDNKVPGKGGERVKV 721
                  G+ LSYKMFARDTKASR+ GPPTEC +YH RA E  LP  +      GE  KV
Sbjct: 274 RLLRKLEGKLLSYKMFARDTKASRNDGPPTECFVYHARAMEVKLPATDH-----GEETKV 328

Query: 722 MCVELVGNRFLRRMVRVLVSTSIREAAAGADNDALLKLMDXXXXXXXXXXXXXDGLCLLD 901
           MCVELV NRFLR+MVRVLV+TSIREAAAGA++DAL+KLMD             DGLCL+D
Sbjct: 329 MCVELVANRFLRKMVRVLVATSIREAAAGAEDDALIKLMDATCRRATAPPAPPDGLCLVD 388

Query: 902 VGYAEFNPENCLI 940
           VGY EF P+ C I
Sbjct: 389 VGYTEFEPQKCFI 401