BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025005
         (266 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi]           59   5e-07

>gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi]
          Length = 701

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 35/74 (47%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
 Frame = -2

Query: 217 AMIQIPNDNNHNRPFKFEGQNFKRWKAKMHFYLKLMKVADVL--DNPKPTDTELHEPARS 44
           A + IP  N+  RP KF GQNFKRW+ KM FYL  + +A  L  D PKP + E      S
Sbjct: 30  ASVAIPV-NHAERPEKFNGQNFKRWQQKMFFYLTTLNLARFLTKDAPKPKEGETDIQVAS 88

Query: 43  HAIGKWEQADDLCK 2
            AI  W  +D LCK
Sbjct: 89  -AIDAWHHSDFLCK 101