BLASTX nr result

ID: Coptis23_contig00024981 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024981
         (566 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284600.2| PREDICTED: uncharacterized protein LOC100248...    86   4e-15
ref|XP_004161204.1| PREDICTED: uncharacterized LOC101212974, par...    76   4e-12
ref|XP_004147423.1| PREDICTED: uncharacterized protein LOC101212...    76   4e-12
ref|XP_003527950.1| PREDICTED: uncharacterized protein LOC100793...    57   5e-11

>ref|XP_002284600.2| PREDICTED: uncharacterized protein LOC100248990 [Vitis vinifera]
          Length = 1817

 Score = 85.9 bits (211), Expect = 4e-15
 Identities = 67/200 (33%), Positives = 92/200 (46%), Gaps = 25/200 (12%)
 Frame = -2

Query: 532 LPECPVCLQEFNKXXXXXXXXXXXXXXXXXXXXV---HFLKTKNI----DLLSFISQQNP 374
           LPECPVCLQ ++                          FL T        L+ F   Q P
Sbjct: 5   LPECPVCLQTYDTDQAIPRVLACGHTACEACITHLPQRFLDTIRCPACTQLVKFSHLQGP 64

Query: 373 TSLK-------------SPKQESSTTLVSQHAFFLPSFWSQEFLTNWKYWVLPMGSVSVE 233
           ++L              S  Q+     ++ H  FLP  WS +F + WK WVLP  +VSVE
Sbjct: 65  SALPKNIDLLRLCLSEDSDYQKPQKRPITSHYEFLPRLWSDQFYSVWKDWVLPNDAVSVE 124

Query: 232 TT-GNDLFSLGYGKIVKCDEAKGRV---GYREGEMVSLLCIGT-SVMNDSVISYSYIVRV 68
              G D   + +G+I     +   V     +E + VSL+ I + S +NDSVIS+SY+ R+
Sbjct: 125 PRGGKDFCDVIHGRIASSSSSSPSVIRWWMKENQNVSLVRIASLSFVNDSVISFSYMARI 184

Query: 67  MQFLNEMNDGERDELCLILR 8
           M  LN M + +R EL LILR
Sbjct: 185 MNCLNGMKEEKRYELGLILR 204


>ref|XP_004161204.1| PREDICTED: uncharacterized LOC101212974, partial [Cucumis sativus]
          Length = 741

 Score = 75.9 bits (185), Expect = 4e-12
 Identities = 51/141 (36%), Positives = 73/141 (51%), Gaps = 4/141 (2%)
 Frame = -2

Query: 415 KNIDLLSFISQQNPTSLKSPKQESSTTLVSQHAFFLPSFWSQEFLTNWKYWVLPMGSVSV 236
           KNIDLL    + N   L S K    +  ++Q   F P  WS EF   WK+WVLP  +VS+
Sbjct: 66  KNIDLLRLCPEPNAGELVSKKSVKRS--INQTHEFFPRLWSDEFYRAWKHWVLPHDAVSI 123

Query: 235 ETTG--NDLFSLGYGKIVKCDEAKGRVGYREGEMVSLLCIGT--SVMNDSVISYSYIVRV 68
           E     + +  L  G+I    ++   +   E   VSL+ I +     ND +  +SY   V
Sbjct: 124 ERCDGVDGVEKLLLGRICPVSDSSFPITVGEDRTVSLVRIVSLPCSNNDCLFKFSYTSMV 183

Query: 67  MQFLNEMNDGERDELCLILRA 5
           ++ LNE+ D E++EL LILRA
Sbjct: 184 LKCLNELKDEEKNELGLILRA 204


>ref|XP_004147423.1| PREDICTED: uncharacterized protein LOC101212974 [Cucumis sativus]
          Length = 761

 Score = 75.9 bits (185), Expect = 4e-12
 Identities = 51/141 (36%), Positives = 73/141 (51%), Gaps = 4/141 (2%)
 Frame = -2

Query: 415 KNIDLLSFISQQNPTSLKSPKQESSTTLVSQHAFFLPSFWSQEFLTNWKYWVLPMGSVSV 236
           KNIDLL    + N   L S K    +  ++Q   F P  WS EF   WK+WVLP  +VS+
Sbjct: 66  KNIDLLRLCPEPNAGELVSKKSVKRS--INQTHEFFPRLWSDEFYRAWKHWVLPHDAVSI 123

Query: 235 ETTG--NDLFSLGYGKIVKCDEAKGRVGYREGEMVSLLCIGT--SVMNDSVISYSYIVRV 68
           E     + +  L  G+I    ++   +   E   VSL+ I +     ND +  +SY   V
Sbjct: 124 ERCDGVDGVEKLLLGRICPVSDSSFPITVGEDRTVSLVRIVSLPCSNNDCLFKFSYTSMV 183

Query: 67  MQFLNEMNDGERDELCLILRA 5
           ++ LNE+ D E++EL LILRA
Sbjct: 184 LKCLNELKDEEKNELGLILRA 204


>ref|XP_003527950.1| PREDICTED: uncharacterized protein LOC100793437 [Glycine max]
          Length = 1815

 Score = 56.6 bits (135), Expect(2) = 5e-11
 Identities = 48/146 (32%), Positives = 62/146 (42%), Gaps = 9/146 (6%)
 Frame = -2

Query: 415 KNIDLLSFISQQNPTSLKS--------PKQESSTTLVSQHAFFLPSFWSQEFLTNWKYWV 260
           KNIDLL    Q +P+   S        P Q S+T     H    P F S E    WK W+
Sbjct: 67  KNIDLLRLSLQHSPSPSSSSSSDHSQIPNQRSTTNSCYYH----PPFSSHELYVTWKDWI 122

Query: 259 LPMGSVSVETTGNDLFSLGYGKIVKCDEAKGRVGYREGEMVSLLCIGTSVMND-SVISYS 83
           LP  +V  +      FS            KGR  +     VSL  I      D S   +S
Sbjct: 123 LPHDAVLTDDHCIGWFS----------STKGRGCFGVNRSVSLAPIVCFPPRDRSKFRFS 172

Query: 82  YIVRVMQFLNEMNDGERDELCLILRA 5
           Y+  V++ L  MN+G ++EL LIL A
Sbjct: 173 YVAWVIKCLEGMNEGAKEELALILEA 198



 Score = 35.8 bits (81), Expect(2) = 5e-11
 Identities = 19/28 (67%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = -1

Query: 497 QNTIRCP-CNQLVNYFNDQGGPCSLPKN 417
           Q+TIRCP C QLV Y + QG P SLPKN
Sbjct: 42  QDTIRCPACTQLVKYPSQQG-PSSLPKN 68


Top