BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024979
         (1767 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    62   1e-17
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    53   3e-14
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1...    53   1e-13
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ...    49   5e-13
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...    60   1e-12

>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
           (fragment)
          Length = 1365

 Score = 62.0 bits (149), Expect(2) = 1e-17
 Identities = 30/71 (42%), Positives = 43/71 (60%)
 Frame = -2

Query: 260 WFITLVYGHPISHKRSLVWDHLRSIATSCVGP*LLWGDFNAILSMDEKLGGSKVNLKAVQ 81
           WFI+ VYG P++H R  +W+HL SI         L GDFN I S DEKLGG + +  + Q
Sbjct: 98  WFISCVYGLPVTHMRPKLWEHLNSIGLKRAEAWCLIGDFNDIRSNDEKLGGPRRSPSSFQ 157

Query: 80  EFQDLISNFNL 48
            F+ ++ N ++
Sbjct: 158 CFEHMLLNCSM 168



 Score = 55.8 bits (133), Expect(2) = 1e-17
 Identities = 29/92 (31%), Positives = 49/92 (53%)
 Frame = -3

Query: 556 MLMWNCRGMGTSTIAQTLKKMIWRHNPDVIFLVETXXXXXXXXXXXXXLRYPNAFVVDAE 377
           ++ WNC+G+      + LK+M   H PD++FL+ET             L Y     V+ E
Sbjct: 2   VISWNCQGLRNPWTIRYLKEMKKDHFPDILFLMETKNSQDFVYKVFCWLGYDFIHTVEPE 61

Query: 376 GHSGGLALLYKDKIDMEIIGAGKHAIACKFSN 281
           G SGGLA+ +K  +++E + A K+ +  + S+
Sbjct: 62  GRSGGLAIFWKSHLEIEFLYADKNLMDLQVSS 93


>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1374

 Score = 53.1 bits (126), Expect(2) = 3e-14
 Identities = 27/86 (31%), Positives = 48/86 (55%)
 Frame = -3

Query: 556 MLMWNCRGMGTSTIAQTLKKMIWRHNPDVIFLVETXXXXXXXXXXXXXLRYPNAFVVDAE 377
           +L WNC+G+G +   + L+++   + P+VIFL ET             L + +   V+  
Sbjct: 3   ILSWNCQGVGNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGHLGFFDLHTVEPI 62

Query: 376 GHSGGLALLYKDKIDMEIIGAGKHAI 299
           G SGGLAL++KD + ++++ + K  I
Sbjct: 63  GKSGGLALMWKDSVQIKVLQSDKRLI 88



 Score = 53.1 bits (126), Expect(2) = 3e-14
 Identities = 22/72 (30%), Positives = 42/72 (58%)
 Frame = -2

Query: 263 DWFITLVYGHPISHKRSLVWDHLRSIATSCVGP*LLWGDFNAILSMDEKLGGSKVNLKAV 84
           ++++T +YG P+  +R  +W+ L  +  S  GP +L GDFN ++   EK+GG      + 
Sbjct: 98  EFYLTCIYGEPVQAERGELWERLTRLGLSRSGPWMLTGDFNELVDPSEKIGGPARKESSC 157

Query: 83  QEFQDLISNFNL 48
            EF+ ++++  L
Sbjct: 158 LEFRQMLNSCGL 169


>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
           Arabidopsis thaliana retrotransposon Ta11-1
           gi|976278|gb|AAA75254.1| reverse transcriptase
           [Arabidopsis thaliana]
          Length = 1333

 Score = 52.8 bits (125), Expect(2) = 1e-13
 Identities = 24/81 (29%), Positives = 45/81 (55%)
 Frame = -2

Query: 287 FKLSCGRHDWFITLVYGHPISHKRSLVWDHLRSIATSCVGP*LLWGDFNAILSMDEKLGG 108
           F++  G H+++++ VYG+P    + LVW+ +  I  +   P  + GDFN IL   EK GG
Sbjct: 92  FQIQFGSHEFYVSCVYGNPAFSDKHLVWEKITRIGINRKEPWCMLGDFNPILHNGEKRGG 151

Query: 107 SKVNLKAVQEFQDLISNFNLV 45
            +    +   F D++ + +++
Sbjct: 152 PRRGDSSFLPFTDMLDSCDML 172



 Score = 51.6 bits (122), Expect(2) = 1e-13
 Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
 Frame = -3

Query: 556 MLMWNCRGMGTS---TIAQTLKKMIWRHNPDVIFLVETXXXXXXXXXXXXXLRYPNAFVV 386
           ++ WNC+G+G S   TI + L +M   H P+V+FL+ET             L Y   F V
Sbjct: 3   LVSWNCQGLGWSQDLTIPR-LMEMRLSHFPEVLFLMETKNCSNVVVDLQEWLGYERVFTV 61

Query: 385 DAEGHSGGLALLYKDKIDMEIIGAGKHAI 299
           +  G SGGLAL +K  +D+ I  A K+ I
Sbjct: 62  NPIGLSGGLALFWKKGVDIVIKYADKNLI 90


>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
           Japonica Group]
          Length = 1382

 Score = 48.9 bits (115), Expect(3) = 5e-13
 Identities = 25/72 (34%), Positives = 37/72 (51%)
 Frame = -2

Query: 260 WFITLVYGHPISHKRSLVWDHLRSIATSCVGP*LLWGDFNAILSMDEKLGGSKVNLKAVQ 81
           W I+ VYG P    R   W+ LR +     GP L  GDFN +L +DE LG  + +   +Q
Sbjct: 105 WRISFVYGEPKRELRHFFWNLLRRLHDQWRGPWLCCGDFNEVLCLDEHLGMRERSEPHMQ 164

Query: 80  EFQDLISNFNLV 45
            F+  + +  L+
Sbjct: 165 HFRSCLDDCGLI 176



 Score = 45.4 bits (106), Expect(3) = 5e-13
 Identities = 25/82 (30%), Positives = 38/82 (46%)
 Frame = -3

Query: 544 NCRGMGTSTIAQTLKKMIWRHNPDVIFLVETXXXXXXXXXXXXXLRYPNAFVVDAEGHSG 365
           NCRG+G++     L+ ++    P ++FL ET             L +  +F V  EG SG
Sbjct: 12  NCRGLGSAATVGELRWLVKSLRPSLVFLSETKMRDKQARNLMWSLGFSGSFAVSCEGLSG 71

Query: 364 GLALLYKDKIDMEIIGAGKHAI 299
           GLAL +     + + G   H I
Sbjct: 72  GLALFWTTAYTVSLRGFNSHFI 93



 Score = 27.3 bits (59), Expect(3) = 5e-13
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 49  LCDLSFSGPKYTWCN 5
           L DL F GPK+TW N
Sbjct: 175 LIDLGFVGPKFTWSN 189


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1715

 Score = 60.5 bits (145), Expect(2) = 1e-12
 Identities = 24/72 (33%), Positives = 50/72 (69%)
 Frame = -2

Query: 263 DWFITLVYGHPISHKRSLVWDHLRSIATSCVGP*LLWGDFNAILSMDEKLGGSKVNLKAV 84
           +++++ +YGHPI  +R  +W+ L+ ++    GP ++ GDFN IL+++EK GG + ++ ++
Sbjct: 460 NFYLSCIYGHPIPSERHHLWEKLQRVSAHRSGPWMMCGDFNEILNLNEKKGGRRRSIGSL 519

Query: 83  QEFQDLISNFNL 48
           Q F ++I+  N+
Sbjct: 520 QNFTNMINCCNM 531



 Score = 40.0 bits (92), Expect(2) = 1e-12
 Identities = 18/76 (23%), Positives = 39/76 (51%)
 Frame = -3

Query: 547 WNCRGMGTSTIAQTLKKMIWRHNPDVIFLVETXXXXXXXXXXXXXLRYPNAFVVDAEGHS 368
           WNC+G+G     + L+++   +  D++FL+ET             + + +  ++   G S
Sbjct: 368 WNCQGLGQPLTVRRLEEVQRVYFLDMLFLIETKQQDNYTRDLGVKMGFEDMCIISPRGLS 427

Query: 367 GGLALLYKDKIDMEII 320
           GGL + +K  + +++I
Sbjct: 428 GGLVVYWKKHLSIQVI 443