BLASTX nr result
ID: Coptis23_contig00024978
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00024978
(1714 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 87 6e-20
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas] 89 1e-19
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas] 89 1e-19
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas] 89 1e-19
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 79 2e-18
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 87.0 bits (214), Expect(2) = 6e-20
Identities = 46/137 (33%), Positives = 74/137 (54%)
Frame = +2
Query: 1283 LRYPNAFVVDAEG*SGGLALLYKDKIDLEIIGVGKHAITCKFSNYLAEGDWFITLVYGHP 1462
L Y V+ EG SGGLA+ +K +++E + K+ + + S+ WFI+ VYG P
Sbjct: 50 LGYDFIHTVEPEGRSGGLAIFWKSHLEIEFLYADKNLMDLQVSS--RNKVWFISCVYGLP 107
Query: 1463 ISHKHSLVWDHLRTVATSCVGPWLLWGDFNAILSMDEKLRGSKVNLKVVQEFQDLTSDLN 1642
++H +W+HL ++ W L GDFN I S DEKL G + + Q F+ + + +
Sbjct: 108 VTHMRPKLWEHLNSIGLKRAEAWCLIGDFNDIRSNDEKLGGPRRSPSSFQCFEHMLLNCS 167
Query: 1643 LVDLSFSGPKYTWCKNR 1693
+ +L +G +TW NR
Sbjct: 168 MHELGSTGNSFTWGGNR 184
Score = 38.5 bits (88), Expect(2) = 6e-20
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +1
Query: 1138 MLMWNCRGMGTSTVAQTLKEIIWRHNPDVIFLVETKAS 1251
++ WNC+G+ + LKE+ H PD++FL+ETK S
Sbjct: 2 VISWNCQGLRNPWTIRYLKEMKKDHFPDILFLMETKNS 39
>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
Length = 1898
Score = 88.6 bits (218), Expect(2) = 1e-19
Identities = 48/131 (36%), Positives = 71/131 (54%)
Frame = +2
Query: 1295 NAFVVDAEG*SGGLALLYKDKIDLEIIGVGKHAITCKFSNYLAEGDWFITLVYGHPISHK 1474
N F+V+ G +GGL LL+K ++L +I AI S+ L G+ FIT Y P +
Sbjct: 588 NHFIVNPLGFAGGLLLLWKPALNLSVISHNSQAIHTLASHRL--GNCFITFAYIRPNTFA 645
Query: 1475 HSLVWDHLRTVATSCVGPWLLWGDFNAILSMDEKLRGSKVNLKVVQEFQDLTSDLNLVDL 1654
W++ + +A S PW++ GD N I + DE+ S +N +Q F D SD L+D
Sbjct: 646 KCGFWEYCKQLANSIQSPWMVVGDLNDIATSDEQWGSSSLNYTSLQNFVDAYSDCGLLDP 705
Query: 1655 SFSGPKYTWCK 1687
SGP +TWC+
Sbjct: 706 GSSGPNFTWCR 716
Score = 36.2 bits (82), Expect(2) = 1e-19
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +1
Query: 1090 GFWKHPRGYISATTYRMLMWNCRGMGTSTVAQTLKEIIWRHNPDVIFLVETKAS 1251
G W +P + R+L WNCRG+ S V + +K+++ D + L+E ++S
Sbjct: 520 GRWPNPP-FRGCFLMRILSWNCRGIANSRVRRFVKDLLSTTKADALCLLEIRSS 572
>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 89.4 bits (220), Expect(2) = 1e-19
Identities = 48/131 (36%), Positives = 71/131 (54%)
Frame = +2
Query: 1295 NAFVVDAEG*SGGLALLYKDKIDLEIIGVGKHAITCKFSNYLAEGDWFITLVYGHPISHK 1474
N F+V+ G +GGL LL+K ++L +I AI S+ L G+ FIT Y P +
Sbjct: 56 NHFIVNPLGFAGGLLLLWKPALNLSVISHNSQAIHTLASHRL--GNCFITFAYIRPNTFA 113
Query: 1475 HSLVWDHLRTVATSCVGPWLLWGDFNAILSMDEKLRGSKVNLKVVQEFQDLTSDLNLVDL 1654
W++ + +A S PW++ GD N I + DE+ S +N +Q F D SD L+D
Sbjct: 114 KCRFWEYCKQLANSIQSPWMVVGDLNDIATSDEQWGSSSLNYTSLQNFVDAYSDCGLLDP 173
Query: 1655 SFSGPKYTWCK 1687
SGP +TWC+
Sbjct: 174 GSSGPNFTWCR 184
Score = 35.0 bits (79), Expect(2) = 1e-19
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +1
Query: 1135 RMLMWNCRGMGTSTVAQTLKEIIWRHNPDVIFLVETKAS 1251
R+L WNCRG+ S V + +K+++ D + L+E ++S
Sbjct: 2 RILSWNCRGIANSRVRRFVKDLLSTTKADALCLLEIRSS 40
>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 89.4 bits (220), Expect(2) = 1e-19
Identities = 48/131 (36%), Positives = 71/131 (54%)
Frame = +2
Query: 1295 NAFVVDAEG*SGGLALLYKDKIDLEIIGVGKHAITCKFSNYLAEGDWFITLVYGHPISHK 1474
N F+V+ G +GGL LL+K ++L +I AI S+ L G+ FIT Y P +
Sbjct: 56 NHFIVNPLGFAGGLLLLWKPALNLSVISHNSQAIHTLASHRL--GNCFITFAYIRPNTFA 113
Query: 1475 HSLVWDHLRTVATSCVGPWLLWGDFNAILSMDEKLRGSKVNLKVVQEFQDLTSDLNLVDL 1654
W++ + +A S PW++ GD N I + DE+ S +N +Q F D SD L+D
Sbjct: 114 KCRFWEYCKQLANSIQSPWMVVGDLNDIATSDEQWGSSSLNYTSLQNFVDAYSDCGLLDP 173
Query: 1655 SFSGPKYTWCK 1687
SGP +TWC+
Sbjct: 174 GSSGPNFTWCR 184
Score = 35.0 bits (79), Expect(2) = 1e-19
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +1
Query: 1135 RMLMWNCRGMGTSTVAQTLKEIIWRHNPDVIFLVETKAS 1251
R+L WNCRG+ S V + +K+++ D + L+E ++S
Sbjct: 2 RILSWNCRGIANSRVRRFVKDLLSTTKADALCLLEIRSS 40
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1374
Score = 78.6 bits (192), Expect(2) = 2e-18
Identities = 38/129 (29%), Positives = 70/129 (54%)
Frame = +2
Query: 1307 VDAEG*SGGLALLYKDKIDLEIIGVGKHAITCKFSNYLAEGDWFITLVYGHPISHKHSLV 1486
V+ G SGGLAL++KD + ++++ K I + ++++T +YG P+ + +
Sbjct: 59 VEPIGKSGGLALMWKDSVQIKVLQSDKRLIDALL--IWQDKEFYLTCIYGEPVQAERGEL 116
Query: 1487 WDHLRTVATSCVGPWLLWGDFNAILSMDEKLRGSKVNLKVVQEFQDLTSDLNLVDLSFSG 1666
W+ L + S GPW+L GDFN ++ EK+ G EF+ + + L +++ SG
Sbjct: 117 WERLTRLGLSRSGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNHSG 176
Query: 1667 PKYTWCKNR 1693
+++W NR
Sbjct: 177 YQFSWYGNR 185
Score = 41.6 bits (96), Expect(2) = 2e-18
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +1
Query: 1135 RMLMWNCRGMGTSTVAQTLKEIIWRHNPDVIFLVETK 1245
R+L WNC+G+G + + L+EI + P+VIFL ETK
Sbjct: 2 RILSWNCQGVGNTPTVRHLREIRGLYFPEVIFLCETK 38