BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024895
         (327 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containi...    70   1e-10
ref|XP_002525196.1| pentatricopeptide repeat-containing protein,...    59   3e-07
ref|XP_002334199.1| predicted protein [Populus trichocarpa] gi|2...    59   5e-07
dbj|BAC42187.2| unknown protein [Arabidopsis thaliana]                 57   1e-06
ref|NP_195903.2| pentatricopeptide repeat-containing protein [Ar...    57   1e-06

>ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
            chloroplastic [Vitis vinifera]
            gi|297741486|emb|CBI32618.3| unnamed protein product
            [Vitis vinifera]
          Length = 842

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 39/85 (45%), Positives = 57/85 (67%), Gaps = 6/85 (7%)
 Frame = +1

Query: 19   SEVQDAVVKLLRDELGLCIILTGPRVS-PIRNDVGNPPGTDLIHEKVAMK-----VLESL 180
            S V+ A++KLL+DELGL +   GP+++   R ++G PPG+D   ++   +      LES 
Sbjct: 753  SPVKGAIIKLLQDELGLEVAFAGPKIALDKRINLGGPPGSDPDWQEALGRNRLPTELESS 812

Query: 181  ARRPAILQRVKVTRESMYQWLQKRV 255
             RRPA+LQR KVTR+S+  WLQ+RV
Sbjct: 813  TRRPAVLQRFKVTRKSLDHWLQRRV 837


>ref|XP_002525196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535493|gb|EEF37162.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 786

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
 Frame = +1

Query: 7   ATNYSEVQDAVVKLLRDELGLCIILTGPR-VSPIRNDVGNPPGTDLIHEKVAMK--VLES 177
           AT  +EV+DA+ KLL +ELGL +++  PR  + +  D+  P  +     K + +  +  S
Sbjct: 696 ATQKAEVKDAIFKLLHNELGLEVLIVVPRYTADLETDLEIPLNSYQNWSKSSGRENIRVS 755

Query: 178 LARRPAILQRVKVTRESMYQWLQKR 252
            ARRP +LQR+KVTR S++ WLQ++
Sbjct: 756 SARRPLVLQRLKVTRNSLHSWLQRK 780


>ref|XP_002334199.1| predicted protein [Populus trichocarpa] gi|222870080|gb|EEF07211.1|
           predicted protein [Populus trichocarpa]
          Length = 215

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 33/83 (39%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
 Frame = +1

Query: 19  SEVQDAVVKLLRDELGLCIILTGP-RVSPIRNDVGNP--PGTDLIHEKVAMKVLESLARR 189
           SEV++A+++LLR+ELGL +++  P  +  I+ D  +   PG DL+        + S  RR
Sbjct: 128 SEVKNAIIELLRNELGLEVLVAVPGHLDDIKTDSKSSLDPGPDLVVRLARNNKMASSTRR 187

Query: 190 PAIL-QRVKVTRESMYQWLQKRV 255
           P ++ QR+KV R+S+++WLQ+RV
Sbjct: 188 PIVVTQRLKVRRKSLHEWLQRRV 210


>dbj|BAC42187.2| unknown protein [Arabidopsis thaliana]
          Length = 852

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 35/76 (46%), Positives = 47/76 (61%)
 Frame = +1

Query: 25  VQDAVVKLLRDELGLCIILTGPRVSPIRNDVGNPPGTDLIHEKVAMKVLESLARRPAILQ 204
           VQ+A+VKLLRDEL L ++  G R   I  D       D  + K  + +  S  RRPAIL+
Sbjct: 780 VQEALVKLLRDELSLVVLPAGQR--NIIQDAHCVDDADQENTKSFVSI--SSTRRPAILE 835

Query: 205 RVKVTRESMYQWLQKR 252
           R+ VT+ S+YQWLQ+R
Sbjct: 836 RLMVTKASLYQWLQRR 851


>ref|NP_195903.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|332278227|sp|Q8GYL7.3|PP361_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g02830, chloroplastic; Flags: Precursor
           gi|332003140|gb|AED90523.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 852

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 35/76 (46%), Positives = 47/76 (61%)
 Frame = +1

Query: 25  VQDAVVKLLRDELGLCIILTGPRVSPIRNDVGNPPGTDLIHEKVAMKVLESLARRPAILQ 204
           VQ+A+VKLLRDEL L ++  G R   I  D       D  + K  + +  S  RRPAIL+
Sbjct: 780 VQEALVKLLRDELSLVVLPAGQR--NIIQDAHCVDDADQENTKSFVSI--SSTRRPAILE 835

Query: 205 RVKVTRESMYQWLQKR 252
           R+ VT+ S+YQWLQ+R
Sbjct: 836 RLMVTKASLYQWLQRR 851