BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024891
         (428 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631528.1| PREDICTED: pentatricopeptide repeat-containi...   134   6e-30
ref|XP_003516509.1| PREDICTED: pentatricopeptide repeat-containi...   131   5e-29
ref|XP_003612457.1| Pentatricopeptide repeat-containing protein ...   131   7e-29
ref|XP_002519945.1| pentatricopeptide repeat-containing protein,...   128   6e-28
gb|AFK33630.1| unknown [Lotus japonicus]                              123   2e-26

>ref|XP_003631528.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31790-like [Vitis vinifera]
          Length = 414

 Score =  134 bits (338), Expect = 6e-30
 Identities = 70/142 (49%), Positives = 93/142 (65%), Gaps = 1/142 (0%)
 Frame = -2

Query: 424 VLRACVSVGDYEVGKQVHGLVLKMNCFSDDVFLGSLFINFYGKLGCIRSARCVFDNMRLR 245
           VL+ACV   +  +GKQVHG +LK+  ++ ++FL    I+FYGK  C+  A  VFD    R
Sbjct: 190 VLKACVHTMNLTLGKQVHGWLLKVG-YATNLFLSCYLISFYGKFRCLDDADFVFDQTSER 248

Query: 244 DTVIWTTMIVVYSREEHFQEVLEVFREMGRVGAKKNNFTLSSVIRACGRLGDE-LSGRQI 68
           +TVIWT  +V   + E+  E L  F EMGR G K+N FT SSV+RACGR+ D    GR I
Sbjct: 249 NTVIWTAKMVNKCQGEYMHEALVAFTEMGRAGVKRNEFTYSSVLRACGRMKDHGRCGRLI 308

Query: 67  HGNAIRIGVESDQFVQCSLVDM 2
           H + I++G+ESD +VQC LVDM
Sbjct: 309 HASTIKLGLESDIYVQCGLVDM 330


>ref|XP_003516509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31790-like [Glycine max]
          Length = 423

 Score =  131 bits (330), Expect = 5e-29
 Identities = 68/142 (47%), Positives = 90/142 (63%), Gaps = 1/142 (0%)
 Frame = -2

Query: 424 VLRACVSVGDYEVGKQVHGLVLKMNCFSDDVFLGSLFINFYGKLGCIRSARCVFDNMRLR 245
           +LRAC    +  +G QVHG +LK+    D V L S  INFYG+  C+  A  VFD +   
Sbjct: 206 LLRACACTVNVPLGMQVHGWLLKLGT-CDHVLLSSSLINFYGRFTCLEDASVVFDGVSRH 264

Query: 244 DTVIWTTMIVVYSREEHFQEVLEVFREMGRVGAKKNNFTLSSVIRACGR-LGDELSGRQI 68
           +T+ WT  IV   RE HF EV + F+EMG  G KK+ FT SSV++ACGR L  E  G Q+
Sbjct: 265 NTLTWTAKIVSGCRERHFSEVFDDFKEMGMRGVKKDCFTFSSVLKACGRMLNQERCGEQV 324

Query: 67  HGNAIRIGVESDQFVQCSLVDM 2
           H +AI++G+ SD +VQCSL+ M
Sbjct: 325 HVDAIKLGLVSDHYVQCSLIAM 346


>ref|XP_003612457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355513792|gb|AES95415.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 418

 Score =  131 bits (329), Expect = 7e-29
 Identities = 64/142 (45%), Positives = 93/142 (65%), Gaps = 1/142 (0%)
 Frame = -2

Query: 424 VLRACVSVGDYEVGKQVHGLVLKMNCFSDDVFLGSLFINFYGKLGCIRSARCVFDNMRLR 245
           +L+AC    +  +G QVHG +LK+    D V + S  I FYG+  C+  A  VF+ +   
Sbjct: 201 LLKACACTMNVPLGMQVHGCLLKLGA-CDHVLISSSLIRFYGRFKCLEDANMVFNRVSRH 259

Query: 244 DTVIWTTMIVVYSREEHFQEVLEVFREMGRVGAKKNNFTLSSVIRACGRLGDELS-GRQI 68
           +T+ WT  IV   RE HF E L  F++MGRVG KK++FT SSV++ACGR+ +  S G Q+
Sbjct: 260 NTLTWTAKIVSSCRERHFSEALGDFKKMGRVGVKKDSFTFSSVLKACGRMQNRGSCGEQV 319

Query: 67  HGNAIRIGVESDQFVQCSLVDM 2
           H +AI++G++SD +VQCSL+ M
Sbjct: 320 HADAIKLGLDSDSYVQCSLIAM 341


>ref|XP_002519945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540991|gb|EEF42549.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 403

 Score =  128 bits (321), Expect = 6e-28
 Identities = 63/142 (44%), Positives = 94/142 (66%), Gaps = 1/142 (0%)
 Frame = -2

Query: 424 VLRACVSVGDYEVGKQVHGLVLKMNCFSDDVFLGSLFINFYGKLGCIRSARCVFDNMRLR 245
           +++ C+   +  +GKQVHG++ K+   S+  F  SL ++FYGKLGC+     VF+ +   
Sbjct: 191 IIKCCIYSMNISLGKQVHGILFKVGLTSEISFNVSL-MDFYGKLGCLEDVNSVFNKLDNH 249

Query: 244 DTVIWTTMIVVYSREEHFQEVLEVFREMGRVGAKKNNFTLSSVIRACGRLGDELS-GRQI 68
           +T  WT  IV   R + F EV+E F+EMG  G K+N+FT+SSV+RAC R+GD  + G+Q+
Sbjct: 250 NTATWTAKIVNSCRNQRFYEVIEDFKEMGEAGIKRNSFTVSSVLRACARMGDGGNCGKQV 309

Query: 67  HGNAIRIGVESDQFVQCSLVDM 2
           H   I++G+ESD FVQC L+ M
Sbjct: 310 HVIVIKLGLESDAFVQCGLIAM 331



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
 Frame = -2

Query: 424 VLRACVSVGDY-EVGKQVHGLVLKMNCFSDDVFLGSLFINFYGKLGCIRSARCVFD-NMR 251
           VLRAC  +GD    GKQVH +V+K+   SD  F+    I  YGK G IR A+ VF+  + 
Sbjct: 292 VLRACARMGDGGNCGKQVHVIVIKLGLESD-AFVQCGLIAMYGKCGMIRKAKKVFELVID 350

Query: 250 LRDTVIWTTMIVVYSREEHFQEVLEVFREMGRVGAKKNNFTLSSVIRACG 101
             +T  W  +++ Y R E F E +++  +M     + N   L  V  ACG
Sbjct: 351 KTNTACWNALLMAYVRNELFIEAMKLLYQMEAAKIQVNESLLDHVRIACG 400


>gb|AFK33630.1| unknown [Lotus japonicus]
          Length = 356

 Score =  123 bits (308), Expect = 2e-26
 Identities = 61/141 (43%), Positives = 88/141 (62%), Gaps = 1/141 (0%)
 Frame = -2

Query: 421 LRACVSVGDYEVGKQVHGLVLKMNCFSDDVFLGSLFINFYGKLGCIRSARCVFDNMRLRD 242
           L+AC  + +  +G QVHG +LK+    D V L S  I FYG+  C++ A  VF+ +   +
Sbjct: 140 LKACACIENIPLGMQVHGWLLKLGT-CDHVLLSSSLIRFYGRFTCVKDANAVFNKLSRHN 198

Query: 241 TVIWTTMIVVYSREEHFQEVLEVFREMGRVGAKKNNFTLSSVIRACGRLGDE-LSGRQIH 65
           T  WT  IV   RE  F EV   F+EMGR G KK+ +T SSV++ACG++ D    G Q+H
Sbjct: 199 TSTWTAKIVSGCREMDFPEVFNDFKEMGRQGIKKDTYTFSSVLKACGKMMDHGRCGEQVH 258

Query: 64  GNAIRIGVESDQFVQCSLVDM 2
            +A+++G+ SD +VQCSL+ M
Sbjct: 259 ADAMKLGLASDNYVQCSLIAM 279