BLASTX nr result

ID: Coptis23_contig00024886 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024886
         (385 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI36665.3| unnamed protein product [Vitis vinifera]              182   3e-44
emb|CAN68120.1| hypothetical protein VITISV_024174 [Vitis vinifera]   182   3e-44
ref|XP_002533359.1| conserved hypothetical protein [Ricinus comm...   146   2e-33
ref|XP_003546989.1| PREDICTED: protein FAR1-RELATED SEQUENCE 5-l...   143   2e-32
ref|XP_002265090.2| PREDICTED: protein FAR1-RELATED SEQUENCE 5, ...   142   3e-32

>emb|CBI36665.3| unnamed protein product [Vitis vinifera]
          Length = 289

 Score =  182 bits (461), Expect = 3e-44
 Identities = 84/126 (66%), Positives = 99/126 (78%)
 Frame = -1

Query: 385 QESTDTVPANVETLEPSIGMEFKSLEAAKEFYEVYGMRTGFTIRNGHIRRSHKDHSIIGR 206
           Q+S D +P ++E LEP +GMEF+S E A+EFYE+YG R GFTIRN   RRS KD+SIIGR
Sbjct: 63  QQSIDNLPVSLEPLEPCVGMEFESAEDAREFYEMYGRRMGFTIRNNRTRRSLKDNSIIGR 122

Query: 205 EFVCTKEGFRAKKYLNMEKRILPPRPITREGCNATLRVTKKEEGKWVVSGFVNEHSHALN 26
           EFVC+KEGFR +KY N E RILP RPITREGCNA LR+  K+EGKW + GFV EH+H LN
Sbjct: 123 EFVCSKEGFRVEKYANREHRILPSRPITREGCNAMLRIAAKDEGKWAIYGFVKEHNHELN 182

Query: 25  PSKTTP 8
           PSK  P
Sbjct: 183 PSKMPP 188


>emb|CAN68120.1| hypothetical protein VITISV_024174 [Vitis vinifera]
          Length = 439

 Score =  182 bits (461), Expect = 3e-44
 Identities = 84/126 (66%), Positives = 99/126 (78%)
 Frame = -1

Query: 385 QESTDTVPANVETLEPSIGMEFKSLEAAKEFYEVYGMRTGFTIRNGHIRRSHKDHSIIGR 206
           Q+S D +P ++E LEP +GMEF+S E A+EFYE+YG R GFTIRN   RRS KD+SIIGR
Sbjct: 237 QQSIDNLPVSLEPLEPCVGMEFESAEDAREFYEMYGRRMGFTIRNNRTRRSLKDNSIIGR 296

Query: 205 EFVCTKEGFRAKKYLNMEKRILPPRPITREGCNATLRVTKKEEGKWVVSGFVNEHSHALN 26
           EFVC+KEGFR +KY N E RILP RPITREGCNA LR+  K+EGKW + GFV EH+H LN
Sbjct: 297 EFVCSKEGFRVEKYANREHRILPSRPITREGCNAMLRIAAKDEGKWAIYGFVKEHNHELN 356

Query: 25  PSKTTP 8
           PSK  P
Sbjct: 357 PSKMPP 362



 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 51/118 (43%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
 Frame = -1

Query: 343 EPSIGMEFKSLEAAKEFYEVYGMRTGFTIRNGHIRRSHKDHSIIGREFVCTKEGFRAKKY 164
           EP  G+ F+S EAA+ FYE Y  R GF  R    R+S +D SII R   C KEGF     
Sbjct: 30  EPYEGLLFESEEAARAFYEEYARRVGFLTRIISSRKSERDGSIISRRLACNKEGFNLNSQ 89

Query: 163 LNMEKRILPPRPITREGCNATLRVTKKEEGKWVVSGFVNEHSHAL----NPSKTTPPQ 2
                RI   R   REGC A + V +++ GKWVV+ FV EH+H L      S+ TP +
Sbjct: 90  KTGRVRI-RKRESKREGCMAMILVKREKLGKWVVTKFVREHNHPLVISSGNSRPTPDE 146


>ref|XP_002533359.1| conserved hypothetical protein [Ricinus communis]
           gi|223526799|gb|EEF29021.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 247

 Score =  146 bits (368), Expect = 2e-33
 Identities = 69/119 (57%), Positives = 85/119 (71%)
 Frame = -1

Query: 364 PANVETLEPSIGMEFKSLEAAKEFYEVYGMRTGFTIRNGHIRRSHKDHSIIGREFVCTKE 185
           P  +E +EP +G EF+S E A+EFYE+YG + GFTIRN  IRRS KD+SIIGREFVC+KE
Sbjct: 52  PTALEPVEPIVGKEFESAEDAREFYEMYGRQMGFTIRNNRIRRSLKDNSIIGREFVCSKE 111

Query: 184 GFRAKKYLNMEKRILPPRPITREGCNATLRVTKKEEGKWVVSGFVNEHSHALNPSKTTP 8
           GFRA K    E  ++   P TREGC+A LR+  K+  KWV+ GF  EH+H LNPSK  P
Sbjct: 112 GFRAGKCTKRENGVISSLPATREGCSAMLRIAAKDGAKWVIYGFNKEHNHELNPSKIPP 170


>ref|XP_003546989.1| PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max]
          Length = 259

 Score =  143 bits (360), Expect = 2e-32
 Identities = 66/118 (55%), Positives = 88/118 (74%), Gaps = 1/118 (0%)
 Frame = -1

Query: 367 VPANVETLEPSIGMEFKSLEAAKEFYEVYGMRTGFTIRNGHIRRSHKDHSIIGREFVCTK 188
           +  ++E +EP IGMEF S E A+EFY  YG R GFT+R  H RRS  ++ +IG++FVC+K
Sbjct: 54  ISTDIEAVEPFIGMEFNSREEAREFYIAYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSK 113

Query: 187 EGFRAKKYLNMEKRILPPRPITREGCNATLRVTKKEEGKWVVSGFVNEHSHAL-NPSK 17
           EGFRAKKYL+ + R+LPP P TREGC A +R+  ++ GKWVV+ FV EH+H L +PSK
Sbjct: 114 EGFRAKKYLHRKDRVLPPPPATREGCQAMIRLALRDRGKWVVTKFVKEHTHKLMSPSK 171


>ref|XP_002265090.2| PREDICTED: protein FAR1-RELATED SEQUENCE 5, partial [Vitis
           vinifera]
          Length = 244

 Score =  142 bits (358), Expect = 3e-32
 Identities = 68/115 (59%), Positives = 86/115 (74%), Gaps = 1/115 (0%)
 Frame = -1

Query: 358 NVETLEPSIGMEFKSLEAAKEFYEVYGMRTGFTIRNGHIRRSHKDHSIIGREFVCTKEGF 179
           N E LEP IGMEF S + A+EFY  YG RTGFT+R  H RRS  ++ +IG++FVC+KEGF
Sbjct: 54  NREVLEPYIGMEFNSRDEAREFYVAYGRRTGFTVRIHHNRRSRVNNQVIGQDFVCSKEGF 113

Query: 178 RAKKYLNMEKRILPPRPITREGCNATLRVTKKEEGKWVVSGFVNEHSHAL-NPSK 17
           RAKKY+  + R+LPP PITREGC A +R+  ++  KWVV+ FV EHSH L +PSK
Sbjct: 114 RAKKYVYRKDRVLPPPPITREGCQAMIRLALRDGAKWVVTKFVKEHSHKLMSPSK 168


Top