BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024839
         (464 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN08954.1| Ribonuclease H [Medicago truncatula]                    70   2e-10
ref|XP_003547252.1| PREDICTED: putative ribonuclease H protein A...    65   7e-09
ref|XP_003605652.1| GDSL esterase/lipase [Medicago truncatula] g...    62   5e-08
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    59   5e-07
ref|XP_003603678.1| hypothetical protein MTR_3g111040 [Medicago ...    55   8e-06

>gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
          Length = 175

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 48/134 (35%), Positives = 67/134 (50%), Gaps = 4/134 (2%)
 Frame = +2

Query: 2   GNPGTGGVGVLFRNHNTTVLGVLTYDMGVTTNYTAECTAIVMAA*IAARHNWKKLWIESD 181
           G P  G  G +FRN  T  LG    ++G  T + AE  A + A   +  +N + +W+E+D
Sbjct: 21  GAPSCGATGGVFRNWQTHSLGGFAQNIGHATCFKAELCAAIFAIEKSIEYNLRDIWLETD 80

Query: 182 SKAAVQSFGQNQ-VPRM*KARW---LRTVYKLDFWCIPHILRETNLNFGADSAAKKGNSL 349
           SK  V++F  ++ VP   + RW   L    K+   C  HI RE N   GADS AK G SL
Sbjct: 81  SKLVVKAFSSSEHVPWQLRTRWNNCLALAQKIKCVC-THIHREGNA--GADSLAKNGKSL 137

Query: 350 IRGVSLWSTTRSSF 391
               S W ++   F
Sbjct: 138 ALLTSQWWSSSPLF 151


>ref|XP_003547252.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
           max]
          Length = 193

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 27/67 (40%), Positives = 40/67 (59%)
 Frame = +2

Query: 2   GNPGTGGVGVLFRNHNTTVLGVLTYDMGVTTNYTAECTAIVMAA*IAARHNWKKLWIESD 181
           GNPGT G G +F+N  T VLG    ++G   +   E T++++A  + A+ NW KLW+E D
Sbjct: 59  GNPGTAGCGDIFKNERTCVLGCFVLNLGTQNSLFVELTSVILAIGLTAKKNWNKLWLECD 118

Query: 182 SKAAVQS 202
           S+    S
Sbjct: 119 SELTATS 125


>ref|XP_003605652.1| GDSL esterase/lipase [Medicago truncatula]
           gi|355506707|gb|AES87849.1| GDSL esterase/lipase
           [Medicago truncatula]
          Length = 1004

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
 Frame = +2

Query: 26  GVLFRNHNTTVLGVLTYDMGVTTNYTAECTAIVMAA*IAARHNWKKLWIESDSKAAVQSF 205
           G +FR+ N   L     ++G  + Y  E  AI+    IA + NW+ +WIESDS   V +F
Sbjct: 249 GGVFRDQNANFLSCFAKNLGGGSAYQPELAAIMRVVEIAYQRNWRNIWIESDSALVVMAF 308

Query: 206 GQ-NQVPRM*KARWL---RTVYKLDFWCIPHILRETNLNFGADSAAKKGNSLIRGVSLW 370
            + + +P   + RW+   + + +++F  I HI RE N    AD  A KG   I GV++W
Sbjct: 309 KKMSMIPCRLRNRWINCRKLLCRMNF-VITHIYREDNR--CADKLASKGLD-IEGVTIW 363


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 2/125 (1%)
 Frame = +2

Query: 11   GTGGVGVLFRNHNTTVLGVLTYDMGVTTNYTAECTAIVMAA*IAARHNWKKLWIESDSKA 190
            G    G LFR+ + + LG  + ++G+ + + AE  A ++A   AA H W+ LW+ESDS +
Sbjct: 1034 GLAACGGLFRDSSGSFLGAFSCNIGLASVFHAETLAFILALEHAAHHGWRNLWLESDSTS 1093

Query: 191  AVQSFGQNQ-VPRM*KARWLRTVYKLDFWCI-PHILRETNLNFGADSAAKKGNSLIRGVS 364
            A+  F  +  V  + + RW     +L    I  HIL E N    AD+ A  G+  I+G S
Sbjct: 1094 ALMIFSNSSLVQWLLRNRW-HNAQRLGIQVISSHILHEGNR--CADNLANMGHG-IQG-S 1148

Query: 365  LWSTT 379
            +W  T
Sbjct: 1149 IWLET 1153


>ref|XP_003603678.1| hypothetical protein MTR_3g111040 [Medicago truncatula]
           gi|355492726|gb|AES73929.1| hypothetical protein
           MTR_3g111040 [Medicago truncatula]
          Length = 132

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
 Frame = +2

Query: 26  GVLFRNHNTTVLGVLTYDMGVTTNYTAECTAIVMAA*IAARHNWKKLWIESDSKAAVQSF 205
           G +FR++  T LG    ++G  + +  E   +++A   AA +NW +LW+ESDS +A Q+F
Sbjct: 5   GGIFRDYCGTFLGGFATNVGRVSVFEVEVLGLILAMEYAASNNWSRLWLESDSSSAAQAF 64

Query: 206 GQNQVPRM-*KARWLRTVYKLDFWCIPHILRETNL 307
            +  +  +  + RW    +   F    HI RE N+
Sbjct: 65  HKPSLIHVGLRNRWHNCTHNGMFIICSHIFREGNV 99