BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024767
         (911 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280960.2| PREDICTED: DNA topoisomerase 1-like [Vitis v...   463   e-128
emb|CAN67233.1| hypothetical protein VITISV_020021 [Vitis vinifera]   463   e-128
ref|NP_194849.3| DNA topoisomerase, type IA, core [Arabidopsis t...   445   e-123
ref|XP_003551158.1| PREDICTED: DNA topoisomerase 1-like [Glycine...   442   e-122
ref|XP_003545557.1| PREDICTED: DNA topoisomerase 1-like [Glycine...   439   e-121

>ref|XP_002280960.2| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera]
          Length = 1185

 Score =  463 bits (1192), Expect = e-128
 Identities = 234/303 (77%), Positives = 260/303 (85%)
 Frame = +1

Query: 1    RDLAGRSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALNGAENLILASDPDREGEAIAWHI 180
            RDLAGRSGSVRPDDDFSMVWEVPSAAWTHLKSIKVAL GAENLILASDPDREGEAIAWHI
Sbjct: 412  RDLAGRSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALGGAENLILASDPDREGEAIAWHI 471

Query: 181  TEMLQQQDALHENLNVARVVFHEITESSIKSAMQNPRDIDADLVHAYLARRALDYLIGFS 360
             EML QQDALH++L VARVVFHEITESSIKSA+  PR+ID +LVHAYLARRALDYLIGF+
Sbjct: 472  IEMLLQQDALHKDLTVARVVFHEITESSIKSALDAPREIDVNLVHAYLARRALDYLIGFN 531

Query: 361  ISPLLWRKLPACQSAGRVQSAALALICDREMEIDGFKTQDYWTVDVEFNKLEPGSVGKIS 540
            ISPLLWRKLP CQSAGRVQSAALALICDREMEID FK Q+YWTV+VEFN+ +  S+    
Sbjct: 532  ISPLLWRKLPGCQSAGRVQSAALALICDREMEIDEFKPQEYWTVEVEFNRKQGSSMNSKF 591

Query: 541  FSSHLTHLNSKKLEQLXXXXXXXXXXXXQKMASSSFEVLGSKRSKARRNPPTPYITSTLQ 720
            F S+LTH +SKKL Q             Q++ S  F+V+GSKR+K R+NPPTPYITSTLQ
Sbjct: 592  FPSYLTHFDSKKLNQFSISSHTEAKAIEQEINSLEFKVIGSKRNKMRKNPPTPYITSTLQ 651

Query: 721  QDAANKLNFTAGHTMKLAQKLYEGVKLSDDEATGLITYMRTDGLHVSDVAAEDIRSSVIE 900
            QDAANKL+F+A +TMKLAQ+LYEGV+LSD +A GLITYMRTDGLHVSD AA+DIRS V E
Sbjct: 652  QDAANKLHFSAMYTMKLAQRLYEGVQLSDGKAAGLITYMRTDGLHVSDEAAKDIRSLVAE 711

Query: 901  RYG 909
            RYG
Sbjct: 712  RYG 714


>emb|CAN67233.1| hypothetical protein VITISV_020021 [Vitis vinifera]
          Length = 1039

 Score =  463 bits (1192), Expect = e-128
 Identities = 234/303 (77%), Positives = 260/303 (85%)
 Frame = +1

Query: 1    RDLAGRSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALNGAENLILASDPDREGEAIAWHI 180
            RDLAGRSGSVRPDDDFSMVWEVPSAAWTHLKSIKVAL GAENLILASDPDREGEAIAWHI
Sbjct: 425  RDLAGRSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALGGAENLILASDPDREGEAIAWHI 484

Query: 181  TEMLQQQDALHENLNVARVVFHEITESSIKSAMQNPRDIDADLVHAYLARRALDYLIGFS 360
             EML QQDALH++L VARVVFHEITESSIKSA+  PR+ID +LVHAYLARRALDYLIGF+
Sbjct: 485  IEMLLQQDALHKDLTVARVVFHEITESSIKSALDAPREIDVNLVHAYLARRALDYLIGFN 544

Query: 361  ISPLLWRKLPACQSAGRVQSAALALICDREMEIDGFKTQDYWTVDVEFNKLEPGSVGKIS 540
            ISPLLWRKLP CQSAGRVQSAALALICDREMEID FK Q+YWTV+VEFN+ +  S+    
Sbjct: 545  ISPLLWRKLPGCQSAGRVQSAALALICDREMEIDEFKPQEYWTVEVEFNRKQGSSMNSKF 604

Query: 541  FSSHLTHLNSKKLEQLXXXXXXXXXXXXQKMASSSFEVLGSKRSKARRNPPTPYITSTLQ 720
            F S+LTH +SKKL Q             Q++ S  F+V+GSKR+K R+NPPTPYITSTLQ
Sbjct: 605  FPSYLTHFDSKKLNQFSISSHTEAKAIEQEINSLEFKVIGSKRNKMRKNPPTPYITSTLQ 664

Query: 721  QDAANKLNFTAGHTMKLAQKLYEGVKLSDDEATGLITYMRTDGLHVSDVAAEDIRSSVIE 900
            QDAANKL+F+A +TMKLAQ+LYEGV+LSD +A GLITYMRTDGLHVSD AA+DIRS V E
Sbjct: 665  QDAANKLHFSAMYTMKLAQRLYEGVQLSDGKAAGLITYMRTDGLHVSDEAAKDIRSLVAE 724

Query: 901  RYG 909
            RYG
Sbjct: 725  RYG 727


>ref|NP_194849.3| DNA topoisomerase, type IA, core [Arabidopsis thaliana]
            gi|332660478|gb|AEE85878.1| DNA topoisomerase, type IA,
            core [Arabidopsis thaliana]
          Length = 1284

 Score =  445 bits (1145), Expect = e-123
 Identities = 223/303 (73%), Positives = 252/303 (83%)
 Frame = +1

Query: 1    RDLAGRSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALNGAENLILASDPDREGEAIAWHI 180
            RDLA RSGSVRPDDDFSMVWEVPS+AWTH+KSIKVALNGAENLILASDPDREGEAIAWHI
Sbjct: 506  RDLATRSGSVRPDDDFSMVWEVPSSAWTHIKSIKVALNGAENLILASDPDREGEAIAWHI 565

Query: 181  TEMLQQQDALHENLNVARVVFHEITESSIKSAMQNPRDIDADLVHAYLARRALDYLIGFS 360
             EMLQQQ ALHE++ VARVVFHEITES+IKSA+Q+PR+ID DLVHAYLARRALDYLIGF+
Sbjct: 566  IEMLQQQGALHESMTVARVVFHEITESAIKSALQSPREIDGDLVHAYLARRALDYLIGFN 625

Query: 361  ISPLLWRKLPACQSAGRVQSAALALICDREMEIDGFKTQDYWTVDVEFNKLEPGSVGKIS 540
            ISPLLWRKLP C SAGRVQSAALAL+CDRE EIDGFK Q+YWTV ++      G     +
Sbjct: 626  ISPLLWRKLPGCPSAGRVQSAALALVCDRESEIDGFKPQEYWTVGIKVK----GKDNSAT 681

Query: 541  FSSHLTHLNSKKLEQLXXXXXXXXXXXXQKMASSSFEVLGSKRSKARRNPPTPYITSTLQ 720
            FS+HLT LNSK+L QL            Q++ S  F V G+K S  R+NPPTPYITSTLQ
Sbjct: 682  FSAHLTSLNSKRLNQLSISSEANAQDIEQRIKSEGFLVKGTKTSTTRKNPPTPYITSTLQ 741

Query: 721  QDAANKLNFTAGHTMKLAQKLYEGVKLSDDEATGLITYMRTDGLHVSDVAAEDIRSSVIE 900
            QDAANKL+F+  HTMKLAQKLYEGV+LSD ++ GLITYMRTDGLH++D A +DI+S V E
Sbjct: 742  QDAANKLHFSTAHTMKLAQKLYEGVQLSDGKSAGLITYMRTDGLHIADEAIKDIQSLVAE 801

Query: 901  RYG 909
            RYG
Sbjct: 802  RYG 804


>ref|XP_003551158.1| PREDICTED: DNA topoisomerase 1-like [Glycine max]
          Length = 1070

 Score =  442 bits (1136), Expect = e-122
 Identities = 221/303 (72%), Positives = 249/303 (82%)
 Frame = +1

Query: 1    RDLAGRSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALNGAENLILASDPDREGEAIAWHI 180
            RDLA RSGSVRPDDDFSMVWEVPS AWTHLKSIKVAL+GAENLILASDPDREGEAIAWHI
Sbjct: 293  RDLAARSGSVRPDDDFSMVWEVPSPAWTHLKSIKVALSGAENLILASDPDREGEAIAWHI 352

Query: 181  TEMLQQQDALHENLNVARVVFHEITESSIKSAMQNPRDIDADLVHAYLARRALDYLIGFS 360
             EMLQQQ ALH+N+++ARVVFHEITE SIK ++Q PR+ID +LV AYLARRALDYLIGFS
Sbjct: 353  IEMLQQQGALHDNISLARVVFHEITEKSIKGSLQTPREIDINLVQAYLARRALDYLIGFS 412

Query: 361  ISPLLWRKLPACQSAGRVQSAALALICDREMEIDGFKTQDYWTVDVEFNKLEPGSVGKIS 540
            ISPLLWRKLP CQSAGRVQSAAL+LICDREMEID FK ++YW V+V+  K E  S   ++
Sbjct: 413  ISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPKEYWIVEVQLKKKELRSNKNLT 472

Query: 541  FSSHLTHLNSKKLEQLXXXXXXXXXXXXQKMASSSFEVLGSKRSKARRNPPTPYITSTLQ 720
            F +HLTH +SKKL Q               + S+ F V+  K+SK+RRNPPTPYITSTLQ
Sbjct: 473  FPAHLTHFDSKKLNQFSITSDTEARDIQSTINSADFHVVSLKKSKSRRNPPTPYITSTLQ 532

Query: 721  QDAANKLNFTAGHTMKLAQKLYEGVKLSDDEATGLITYMRTDGLHVSDVAAEDIRSSVIE 900
            QDAANKL+FTA HTMKLAQKLYEGV+LSD  A GLITY+RTDGLH+SD     IRS +IE
Sbjct: 533  QDAANKLHFTASHTMKLAQKLYEGVELSDGIAVGLITYIRTDGLHISDEVVASIRSLIIE 592

Query: 901  RYG 909
            RYG
Sbjct: 593  RYG 595


>ref|XP_003545557.1| PREDICTED: DNA topoisomerase 1-like [Glycine max]
          Length = 1197

 Score =  439 bits (1130), Expect = e-121
 Identities = 219/303 (72%), Positives = 249/303 (82%)
 Frame = +1

Query: 1    RDLAGRSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALNGAENLILASDPDREGEAIAWHI 180
            RDLA RSGSVRPDDDFSMVWEVP  AWTHLKSIKVAL+ AENLILASDPDREGEAIAWHI
Sbjct: 420  RDLAARSGSVRPDDDFSMVWEVPPPAWTHLKSIKVALSRAENLILASDPDREGEAIAWHI 479

Query: 181  TEMLQQQDALHENLNVARVVFHEITESSIKSAMQNPRDIDADLVHAYLARRALDYLIGFS 360
             EMLQQQ ALH+N+++ARVVFHEITE SIK A+Q PR+ID +LV AYLARRALDYLIGF+
Sbjct: 480  IEMLQQQGALHDNISLARVVFHEITEKSIKGALQTPREIDVNLVQAYLARRALDYLIGFN 539

Query: 361  ISPLLWRKLPACQSAGRVQSAALALICDREMEIDGFKTQDYWTVDVEFNKLEPGSVGKIS 540
            ISPLLWRKLP CQSAGRVQSAAL+LICDREMEID FK ++YWTV+V+  K E  S   ++
Sbjct: 540  ISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPKEYWTVEVQMKKKELRSNKNLT 599

Query: 541  FSSHLTHLNSKKLEQLXXXXXXXXXXXXQKMASSSFEVLGSKRSKARRNPPTPYITSTLQ 720
            F +HLTH +SKKL +               + S+ F V+  K++K+RRNPPTPYITSTLQ
Sbjct: 600  FPAHLTHFDSKKLNKFSITSDTEARDIRSNINSADFHVVSLKKNKSRRNPPTPYITSTLQ 659

Query: 721  QDAANKLNFTAGHTMKLAQKLYEGVKLSDDEATGLITYMRTDGLHVSDVAAEDIRSSVIE 900
            QDAANKL+FTA HTMKLAQKLYEGV+LSD  A GLITY+RTDGLH+SD A   IRS +IE
Sbjct: 660  QDAANKLHFTASHTMKLAQKLYEGVELSDSVAVGLITYIRTDGLHISDEAVASIRSLIIE 719

Query: 901  RYG 909
            RYG
Sbjct: 720  RYG 722